View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2716_low_4 (Length: 454)

Name: NF2716_low_4
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2716_low_4
NF2716_low_4
[»] chr2 (13 HSPs)
chr2 (213-343)||(7994630-7994760)
chr2 (54-118)||(7993990-7994054)
chr2 (1-55)||(22388138-22388192)
chr2 (1-55)||(23367012-23367066)
chr2 (1-58)||(12969737-12969794)
chr2 (1-55)||(1102724-1102778)
chr2 (1-55)||(1646510-1646564)
chr2 (1-55)||(3519130-3519184)
chr2 (1-55)||(39938393-39938447)
chr2 (3-55)||(40756911-40756963)
chr2 (4-57)||(37673741-37673794)
chr2 (3-52)||(36447483-36447532)
chr2 (3-55)||(39561895-39561947)
[»] chr8 (19 HSPs)
chr8 (1-59)||(40918727-40918785)
chr8 (1-55)||(7147136-7147190)
chr8 (1-55)||(30999524-30999578)
chr8 (1-55)||(40058303-40058357)
chr8 (1-55)||(43275399-43275453)
chr8 (4-55)||(11646325-11646376)
chr8 (4-55)||(36068306-36068357)
chr8 (1-56)||(37345794-37345849)
chr8 (1-55)||(2539930-2539984)
chr8 (1-55)||(11174223-11174277)
chr8 (4-55)||(3585677-3585728)
chr8 (1-55)||(27035218-27035272)
chr8 (4-55)||(28568144-28568195)
chr8 (4-55)||(28575737-28575788)
chr8 (4-55)||(35866839-35866890)
chr8 (3-58)||(45400767-45400822)
chr8 (1-40)||(20546308-20546347)
chr8 (17-59)||(45278716-45278758)
chr8 (17-57)||(27034995-27035035)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-58)||(45676-45733)
[»] chr6 (13 HSPs)
chr6 (1-61)||(7761523-7761583)
chr6 (1-55)||(1605801-1605855)
chr6 (1-55)||(8626705-8626759)
chr6 (1-58)||(4129649-4129706)
chr6 (4-55)||(29260418-29260469)
chr6 (1-55)||(13757430-13757484)
chr6 (4-55)||(15064695-15064746)
chr6 (6-55)||(17942671-17942720)
chr6 (1-48)||(8235848-8235895)
chr6 (1-55)||(31559738-31559792)
chr6 (1-57)||(30734481-30734537)
chr6 (4-55)||(19996322-19996373)
chr6 (17-55)||(15064933-15064971)
[»] chr4 (19 HSPs)
chr4 (1-57)||(12071783-12071839)
chr4 (1-55)||(14261267-14261321)
chr4 (1-55)||(21310644-21310698)
chr4 (1-55)||(24706247-24706301)
chr4 (1-55)||(25704874-25704928)
chr4 (1-55)||(44569060-44569114)
chr4 (1-53)||(21661537-21661589)
chr4 (1-53)||(21670301-21670353)
chr4 (1-55)||(22321268-22321322)
chr4 (1-55)||(40122487-40122541)
chr4 (1-54)||(21064984-21065037)
chr4 (1-55)||(20249014-20249068)
chr4 (1-45)||(50768085-50768129)
chr4 (3-55)||(19692947-19692999)
chr4 (3-55)||(19703532-19703584)
chr4 (2-56)||(50839030-50839084)
chr4 (4-55)||(32543705-32543756)
chr4 (20-55)||(39295418-39295453)
chr4 (19-55)||(34324618-34324654)
[»] chr7 (6 HSPs)
chr7 (1-55)||(27814034-27814088)
chr7 (1-55)||(25614353-25614407)
chr7 (1-55)||(36453124-36453178)
chr7 (1-55)||(10981731-10981785)
chr7 (1-55)||(40349185-40349238)
chr7 (1-55)||(47110673-47110727)
[»] chr5 (16 HSPs)
chr5 (1-55)||(12806853-12806907)
chr5 (1-55)||(30720492-30720546)
chr5 (1-55)||(36561099-36561153)
chr5 (1-55)||(40886610-40886664)
chr5 (4-55)||(25683229-25683280)
chr5 (1-55)||(10285058-10285112)
chr5 (1-55)||(23097724-23097778)
chr5 (1-55)||(25773872-25773926)
chr5 (3-48)||(11319781-11319826)
chr5 (3-55)||(734339-734391)
chr5 (3-55)||(37900623-37900675)
chr5 (1-53)||(16983480-16983532)
chr5 (4-55)||(1056625-1056676)
chr5 (3-49)||(39071107-39071153)
chr5 (17-58)||(30720731-30720772)
chr5 (3-55)||(26168133-26168185)
[»] chr3 (20 HSPs)
chr3 (1-55)||(29375355-29375409)
chr3 (1-55)||(36881503-36881557)
chr3 (1-55)||(46694110-46694164)
chr3 (4-55)||(13365069-13365120)
chr3 (4-55)||(19241668-19241719)
chr3 (1-58)||(3383299-3383356)
chr3 (4-56)||(32834988-32835040)
chr3 (1-55)||(199078-199132)
chr3 (1-55)||(23087931-23087985)
chr3 (1-55)||(48820563-48820617)
chr3 (3-55)||(18355868-18355920)
chr3 (3-55)||(26783694-26783746)
chr3 (4-55)||(19912164-19912215)
chr3 (4-55)||(38806331-38806382)
chr3 (4-59)||(44276771-44276826)
chr3 (3-49)||(6901786-6901831)
chr3 (1-55)||(13703435-13703489)
chr3 (17-58)||(198852-198893)
chr3 (23-55)||(37293437-37293469)
chr3 (4-44)||(54086778-54086818)
[»] chr1 (22 HSPs)
chr1 (1-55)||(23045279-23045333)
chr1 (1-55)||(24771906-24771960)
chr1 (1-55)||(40783657-40783711)
chr1 (4-55)||(284559-284610)
chr1 (1-56)||(321849-321904)
chr1 (1-64)||(33082967-33083030)
chr1 (1-55)||(23526462-23526516)
chr1 (1-55)||(47037852-47037906)
chr1 (3-55)||(51064754-51064806)
chr1 (1-50)||(46771861-46771910)
chr1 (17-62)||(51064995-51065040)
chr1 (1-49)||(27210961-27211009)
chr1 (4-55)||(3943753-3943804)
chr1 (3-50)||(14925687-14925734)
chr1 (4-55)||(41959799-41959850)
chr1 (2-48)||(23166858-23166904)
chr1 (17-58)||(284330-284371)
chr1 (17-58)||(23045518-23045559)
chr1 (2-55)||(27143014-27143067)
chr1 (2-55)||(31003787-31003840)
chr1 (4-48)||(25929324-25929368)
chr1 (17-57)||(41959076-41959116)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-58)||(384-441)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-35)||(287-321)
[»] scaffold0257 (1 HSPs)
scaffold0257 (4-58)||(23862-23916)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 7994630 - 7994760
Alignment:
Q  213 tagagataaggaagttgtgtgttcaatttaacctccacctagaacaaaaagcttactatgacaaagtaatttattaacatttgtgattagaaaaaattgt 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  7994630 tagagataaggaagttgtgtgttcaatttaacctccgcctagaacaaaaagcttactatgacagagtaatttattaacatttgtgattaaaaaaaattgt 7994729  T
Q  313 gtcaaataagtatttcttttgggaaatgtaa 343  Q
    |||||||||||||||||||||||||||||||    
T  7994730 gtcaaataagtatttcttttgggaaatgtaa 7994760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 7993990 - 7994054
Alignment:
Q  54 taatatatagtacagtgttgaagtcaaaagtttgcgaaataaatgacaaaaatagtataaaaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993990 taatatatagtacagtgttgaagtcaaaagtttgcgaaataaatgacaaaaatagtataaaaaat 7994054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22388192 - 22388138
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22388192 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23367012 - 23367066
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23367012 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12969794 - 12969737
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12969794 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagtaata 12969737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1102724 - 1102778
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1102724 ttgtgaaacaaaattattctctcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1646510 - 1646564
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1646510 ttgtgaaacaaaattattctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3519130 - 3519184
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3519130 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39938393 - 39938447
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39938393 ttgtgaaacaaaattattctctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40756963 - 40756911
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40756963 gtgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 37673794 - 37673741
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37673794 tgaaacaaagttattctctaaaatggacaagtattatgaaacggaaggagtaat 37673741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 36447483 - 36447532
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggga 52  Q
    ||||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  36447483 gtgaaacaaaattattctctaaaagcgacatgtattgtgaaacggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39561947 - 39561895
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| ||||  |||| ||||| ||||||||||||||||    
T  39561947 gtgaaacaaaattattctccaaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40918785 - 40918727
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40918785 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 40918727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7147136 - 7147190
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147136 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30999578 - 30999524
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999578 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40058357 - 40058303
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058357 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43275453 - 43275399
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275453 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 11646376 - 11646325
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11646376 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36068306 - 36068357
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36068306 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37345794 - 37345849
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37345794 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaaggagtaa 37345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2539984 - 2539930
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  2539984 ttgtgaaacaaaattattctttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11174277 - 11174223
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11174277 ttgtgaaacaaaattattctttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 3585677 - 3585728
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  3585677 tgaaacaaaattattctctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27035218 - 27035272
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  27035218 ttgtgaaacaaaattattctccaaaatgaacaagtattatgaaacggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28568144 - 28568195
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28568144 tgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28575737 - 28575788
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28575737 tgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 35866839 - 35866890
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  35866839 tgaaacaaaattattctccaaaatagacaagtattgtgaaacggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 45400822 - 45400767
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||| ||||  |||  |||||||||||||||||||||||||    
T  45400822 gtgaaacaaaattattctccaaaaacgacttgtattatgaaacggagggagtaata 45400767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20546347 - 20546308
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattat 40  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  20546347 ttgtgaaacaaaattattcttcaaaatggacaagtattat 20546308  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 45278716 - 45278758
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  45278716 ttctccaaaatggacatgtattttgaaacggagggagtaatat 45278758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 27035035 - 27034995
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  27035035 ttctccaaaatggacatgtattttgaaacggagggagtaat 27034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45676 - 45733
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 45733  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7761523 - 7761583
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatatat 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7761523 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtactatat 7761583  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1605801 - 1605855
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605801 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8626705 - 8626759
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626705 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4129649 - 4129706
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4129649 ttgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagtaata 4129706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 29260418 - 29260469
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260418 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13757430 - 13757484
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13757430 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 15064746 - 15064695
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15064746 tgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 17942671 - 17942720
Alignment:
Q  6 aaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17942671 aaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8235848 - 8235895
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8235848 ttgtgaaacaaaattattctctaaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31559792 - 31559738
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  31559792 ttgtaaaataaaattattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30734537 - 30734481
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    |||| ||||||||||||| || |||||||||||||||||||||| ||||| ||||||    
T  30734537 ttgtaaaacaaaattattttccaaaatggacaagtattatgaaaaggaggaagtaat 30734481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19996373 - 19996322
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19996373 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12071783 - 12071839
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12071783 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaat 12071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14261267 - 14261321
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261267 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21310644 - 21310698
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310644 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24706301 - 24706247
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706301 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25704874 - 25704928
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704874 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44569060 - 44569114
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44569060 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21661589 - 21661537
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21661589 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21670353 - 21670301
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21670353 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22321322 - 22321268
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22321322 ttgtgaaacaaaattattctctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40122541 - 40122487
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40122541 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21064984 - 21065037
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagt 54  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21064984 ttgtgaaacaaaattattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20249068 - 20249014
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20249068 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50768085 - 50768129
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaac 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50768085 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19692947 - 19692999
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19692947 gtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19703532 - 19703584
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19703532 gtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 50839084 - 50839030
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||||||||||||||||| ||||  |||||||||| ||||| |||||||||||    
T  50839084 tgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagtaa 50839030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 32543705 - 32543756
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||  |||||||||| |||||| || ||||||    
T  32543705 tgaaacaaaattattctctaaaagcgacaagtattgtgaaacagaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  20 tctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  19 ctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27814034 - 27814088
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27814034 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25614407 - 25614353
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25614407 ttgtgaaacaaaattattctctaaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36453178 - 36453124
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36453178 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10981731 - 10981785
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10981731 ttgtgaaacaaaattattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40349185 - 40349238
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40349185 ttgtgaaacaaa-ttattctctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47110673 - 47110727
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  47110673 ttgtgaaacaaaattattctctaaaatgaataagtattatgaaacggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12806907 - 12806853
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806907 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 12806853  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30720546 - 30720492
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720546 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36561153 - 36561099
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561153 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40886664 - 40886610
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40886664 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 25683280 - 25683229
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25683280 tgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10285112 - 10285058
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  10285112 ttgtgaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23097778 - 23097724
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  23097778 ttgtgaaacaaaattattctccaaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25773872 - 25773926
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25773872 ttgtgaaacaaacttattctctaaaatggacaagtattatgaaacggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 11319781 - 11319826
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11319781 gtgaaacaaaattattctctaaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 734391 - 734339
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  734391 gtgaaacaaaattattctccaaaatggacaagtattgtgaaacggtgggagta 734339  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37900675 - 37900623
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||| ||||||    
T  37900675 gtgaaacaaaattattcttcaaaatagacaagtattatgaaacggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16983480 - 16983532
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 53  Q
    ||||||||||||||||||||  ||||| |||||||||||| |||| |||||||    
T  16983480 ttgtgaaacaaaattattcttcaaaatagacaagtattataaaacagagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1056676 - 1056625
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||| |||||||||||| ||||  |||||||||| ||||||||||||||||    
T  1056676 tgaaataaaattattctccaaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 39071107 - 39071153
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||| ||||| |||||||||| |||| |||||    
T  39071107 gtgaaacaaaattattctcaaaaatagacaagtattgtgaatcggag 39071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 30720731 - 30720772
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  30720731 ttctccaaaatggacatgtattttgaaacggagggagtaata 30720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26168133 - 26168185
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||    
T  26168133 gtgaaacaaaattattctctaaaaacgacatgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29375355 - 29375409
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29375355 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36881503 - 36881557
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881503 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46694164 - 46694110
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46694164 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 13365069 - 13365120
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13365069 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19241719 - 19241668
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19241719 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3383299 - 3383356
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  3383299 ttgtgaaacaaaattattctctaaaatggacaagtattataaaacgaaaggagtaata 3383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 32835040 - 32834988
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32835040 tgaaacgaaattattctctacaatggacaagtattatgaaacggagggagtaa 32834988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 199078 - 199132
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  199078 ttgtgaaacaaaattattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23087985 - 23087931
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  23087985 ttgtgaaacaaaattattctttaaaatcgacaagtattatgaaacggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48820563 - 48820617
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  48820563 ttgtgaaacaaaattattttttaaaatggacaagtattatgaaacggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18355920 - 18355868
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  18355920 gtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26783694 - 26783746
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||| |||||| |||||||||| | ||||||||| ||||    
T  26783694 gtgaaacaaaattattctttaaaatagacaagtattgtaaaacggaggaagta 26783746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 19912164 - 19912215
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19912164 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 38806331 - 38806382
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  38806331 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 44276826 - 44276771
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatat 59  Q
    ||||||||||   |||||||||||||||| ||||| |||||||||| |||||||||    
T  44276826 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagtaatat 44276771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6901786 - 6901831
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  6901786 gtgaaacaaaattattctccaaaatggacaa-tattgtgaaacggag 6901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13703435 - 13703489
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||||||| |||||||  | |||||||||||||||||||||||| ||||||    
T  13703435 ttgtaaaacaaatttattcttcagaatggacaagtattatgaaacggatggagta 13703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 198893 - 198852
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  198893 ttctccaaaatggacatgtattttgaaacggagggagtaata 198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 37293469 - 37293437
Alignment:
Q  23 aaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||| ||||||||||||||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 54086778 - 54086818
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaa 44  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  54086778 tgaaacaaaagtattctccaaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23045333 - 23045279
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045333 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24771960 - 24771906
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24771960 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40783711 - 40783657
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783711 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 284559 - 284610
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  284559 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 321849 - 321904
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaa 56  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  321849 ttgtgaaacaaaaatattctctaaaatggacaagtattatgaaacggagggagtaa 321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33082967 - 33083030
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaatatatagt 64  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  33082967 ttgtgaaacaaaattattctttaaaatggacaagtattatgaaacggagggagtattatctagt 33083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23526462 - 23526516
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  23526462 ttgtgaaacaaaattattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47037906 - 47037852
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  47037906 ttgtaaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 51064806 - 51064754
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  51064806 gtgaaacaaaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46771861 - 46771910
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagg 50  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  46771861 ttgtgaaacaaaattattcttcaaaatgaacaagtattatgaaacggagg 46771910  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 51064995 - 51065040
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaatatata 62  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagtaatatata 51065040  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27211009 - 27210961
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 49  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  27211009 ttgtgaaacaaaattattcttaaaaatggacaaatattatgaaacggag 27210961  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 3943753 - 3943804
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  3943753 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 14925687 - 14925734
Alignment:
Q  3 gtgaaacaaaattattctctaaaatggacaagtattatgaaacggagg 50  Q
    ||||||||||||||| ||||||||  |||||||||| |||||||||||    
T  14925687 gtgaaacaaaattatgctctaaaaacgacaagtattgtgaaacggagg 14925734  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 41959799 - 41959850
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  41959799 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 23166904 - 23166858
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    |||||||||||||||||||||||||  ||| |||||| |||||||||    
T  23166904 tgtgaaacaaaattattctctaaaagcgacgagtattgtgaaacgga 23166858  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 284371 - 284330
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  284371 ttctccaaaatggacatgtattttgaaacggagggagtaata 284330  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 23045518 - 23045559
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||| |||||||||| ||||| |||||||||||||||||||    
T  23045518 ttctccaaaatggacatgtattttgaaacggagggagtaata 23045559  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 27143067 - 27143014
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||  ||||| ||||||||| |||| ||||||    
T  27143067 tgtgaaacaaaattattctccaaaagcgacaattattatgaagcggatggagta 27143014  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 31003840 - 31003787
Alignment:
Q  2 tgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 55  Q
    |||||||||||||||||||| ||||  || ||||||| |||||| |||||||||    
T  31003840 tgtgaaacaaaattattctccaaaagcgataagtattgtgaaacagagggagta 31003787  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 25929324 - 25929368
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacgga 48  Q
    ||||||||||||||||| |||||  |||||||||| |||||||||    
T  25929324 tgaaacaaaattattctttaaaagcgacaagtattgtgaaacgga 25929368  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 41959116 - 41959076
Alignment:
Q  17 ttctctaaaatggacaagtattatgaaacggagggagtaat 57  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  41959116 ttctccaaaatggacatgtattttgaaacggagggagtaat 41959076  T

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Target: scaffold1770 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 384 - 441
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  384 ttgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagtaata 441  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 321 - 287
Alignment:
Q  1 ttgtgaaacaaaattattctctaaaatggacaagt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  321 ttgtgaaacaaaattattctctaaaatggacaagt 287  T

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Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 23862 - 23916
Alignment:
Q  4 tgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtaata 58  Q
    ||||||||||   |||||||||||||||| ||||| ||||||||| |||||||||    
T  23862 tgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggagtaata 23916  T

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