View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2716_low_6 (Length: 335)
Name: NF2716_low_6
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2716_low_6 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 23521 - 23217
Alignment:
| Q |
2 |
tcaaatatttaaataagagattaaaatagtgttattttaaaatgtagaaatctatctcgtgagtgactgcaaataagggaatcaaagttatagttacacc |
101 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23521 |
tcaaaaatctaaataagagattaaaatagtgttattttaatatgtagaaatctatctcgtgagtgactgcaaataagggaatcaaagttatagttacacc |
23422 |
T |
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| Q |
102 |
ttaagtttattgtttaatttgtcaataaagttatgtttcttttagttgg-aaagctctcttttaggtggaaaagttctcttttacgcggaaagctctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
23421 |
ttaagtttattgtttaatttgtcaataaagttatgtttcttttaggtggaaaagctctcttttaggtggaaaagctctcttttaggcggaacgctctgaa |
23322 |
T |
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| Q |
201 |
aagttaaacaaaactccaagatcgacttgttc-nnnnnnnnnnnnnnntccaagatcgaagaagaggagaac-attgaactattttttgtccccttcttc |
298 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
23321 |
aagttaaacaaaactccaagatcgacttgttcaaaaaaaaaaaaaaactccaagatcgaagaagaggagaacggttgaactatttttt-tccccttcttc |
23223 |
T |
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| Q |
299 |
taagta |
304 |
Q |
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|||||| |
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| T |
23222 |
taagta |
23217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 40485582 - 40485278
Alignment:
| Q |
2 |
tcaaatatttaaataagagattaaaatagtgttattttaaaatgtagaaatctatctcgtgagtgactgcaaataagggaatcaaagttatagttacacc |
101 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40485582 |
tcaaaaatctaaataagagattaaaatagtgttattttaatatgtagaaatctatctcgtgagtgactgcaaataagggaatcaaagttatagttacacc |
40485483 |
T |
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| Q |
102 |
ttaagtttattgtttaatttgtcaataaagttatgtttcttttagttgg-aaagctctcttttaggtggaaaagttctcttttacgcggaaagctctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
40485482 |
ttaagtttattgtttaatttgtcaataaagttatgtttcttttaggtggaaaagctctcttttaggtggaaaagctctcttttaggcggaacgctctgaa |
40485383 |
T |
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| Q |
201 |
aagttaaacaaaactccaagatcgacttgttc-nnnnnnnnnnnnnnntccaagatcgaagaagaggagaac-attgaactattttttgtccccttcttc |
298 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
40485382 |
aagttaaacaaaactccaagatcgacttgttcaaaaaaaaaaaaaaactccaagatcgaagaagaggagaacggttgaactatttttt-tccccttcttc |
40485284 |
T |
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| Q |
299 |
taagta |
304 |
Q |
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|||||| |
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| T |
40485283 |
taagta |
40485278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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