View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2716_low_7 (Length: 311)
Name: NF2716_low_7
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2716_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 53622059 - 53621912
Alignment:
| Q |
9 |
agaagaagggacgccttcaggccacattggaatgacaatataaactgtaaatctctcccgagatctgatcttactgacaatcttcagcgccaactccata |
108 |
Q |
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| T |
53622059 |
agaagaagggacgccttcaggccacattggaatgacaatataaactgtaaatctctcccgagatctgatcttactgacaatcttcagcgccaactccata |
53621960 |
T |
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| Q |
109 |
ggaatcaaattatcagcacctgatcatagaagtaattattagaattag |
156 |
Q |
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| T |
53621959 |
ggaatcaaattatcagcacctgatcatagaagtaattattagaattag |
53621912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 53621863 - 53621773
Alignment:
| Q |
205 |
gacaaaccctatcccactggacagttttgaaggtaaaacaatgataaaaattggatatttcaagtcataaaaatattttcgatatacaatc |
295 |
Q |
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| T |
53621863 |
gacaaaccctatcccactggacagttttgaaggtaaaacaatgataaaaattggatatttcaagtcataaaaatattttcgatatacaatc |
53621773 |
T |
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