View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2716_low_9 (Length: 267)
Name: NF2716_low_9
Description: NF2716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2716_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 48019827 - 48019584
Alignment:
| Q |
16 |
caatccatgagagctattcaaggggcattgcttattgcttcttttgttcaaggaatgattggattttttggattctggggaatttttggaaggtagaata |
115 |
Q |
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| T |
48019827 |
caatccatgagagctattcaaggggcattgcttattgcttcttttgttcaaggaatgattggattttttggattctggggaatttttggaaggtagaata |
48019728 |
T |
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| Q |
116 |
tgcatatgaaatttcatagtgtcttttaatgcatttagcttctttgatgaaatcagttctagttttggtagtagaataactcaaatactaaattatattt |
215 |
Q |
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| T |
48019727 |
tgcatatgaaatttcatagtgtcttttaatgcatttagcttctttgatgaaatcagttctagttttggtagtagaataactcaaatactaaattatattt |
48019628 |
T |
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| Q |
216 |
aatgtatttattcatattgcaggtttttcagccctctctgtgct |
259 |
Q |
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| T |
48019627 |
aatgtatttattcatattgcaggtttttcagccctctcagtgct |
48019584 |
T |
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