View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717-Insertion-1 (Length: 989)

Name: NF2717-Insertion-1
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717-Insertion-1
NF2717-Insertion-1
[»] chr3 (10 HSPs)
chr3 (7-955)||(42570221-42571173)
chr3 (8-547)||(42577411-42577952)
chr3 (241-310)||(42572825-42572894)
chr3 (820-860)||(42578233-42578273)
chr3 (429-480)||(42573019-42573070)
chr3 (606-648)||(42578045-42578087)
chr3 (6-91)||(42572576-42572661)
chr3 (17-100)||(42594106-42594189)
chr3 (546-591)||(42577965-42578010)
chr3 (275-308)||(42594366-42594399)
[»] chr4 (1 HSPs)
chr4 (265-332)||(27871058-27871125)


Alignment Details
Target: chr3 (Bit Score: 837; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 837; E-Value: 0
Query Start/End: Original strand, 7 - 955
Target Start/End: Original strand, 42570221 - 42571173
Alignment:
Q  7 atatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtccatgatcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42570221 atatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtccatgatcta 42570320  T
Q  107 tggnnnnnnnccctctat-cttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgtatcgaatt 205  Q
    | |       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42570321 tagaaaaaaaccctctattcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgtatcgaatt 42570420  T
Q  206 ttttatctctaattccggttaatactttttaggtgcttgttgatttgttttgtaactgcttttgttggagtgcagattgtggatcctaggcttgcttctt 305  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42570421 ttttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggcttgcttctt 42570520  T
Q  306 atggaactga---taatcccatttatgctgcccatgagctggctctatccataatccgaagtgaaatccgtaaaattactttagatgatttcaacaagga 402  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42570521 atggaactgaggataatcccatttatgctgcccatgagctggctctatccacaatccgaagtgaaatccgtaaaattactttagatgatttcaacaagga 42570620  T
Q  403 aaagaacgatacactgtctnnnnnnnttatggtgagtttagtacctttaactggttgtttatgctatgttactcatttagcattggttcattattttaat 502  Q
    |||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42570621 aaagaacgatacactgcctaagaaaattatggtgagtttagtacctttaactggttgtttatgctatgttactcatttagcattggttcattattttaat 42570720  T
Q  503 aggagcattttgatagttctgttttaggcatgcactaaaatcttggataagtagcacataactaagttctgaaaagaatgtgcctgtttcaaagaagata 602  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  42570721 aggagcatttcgatagttctgttttaggcatgcattaaaatcttggataagtagcacaaaactaagttctgaaaagaatgtgcctgtttcaaggaagata 42570820  T
Q  603 accggtccaacttataatttgatagttctgtttgagtccaattataagaaaggaaagagatgagctaaagatgcaaaggtcgccttaaataatccatgat 702  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42570821 accggtgcaacttataatttgatagttctgtttgagtccaattataagaaaggaaagagatgagctaaagatgcaaaggtcgccttaaataatccatgat 42570920  T
Q  703 ccagttggtgctttggatagtatcaagctaactttgttcatcaacttgactttagtacattttttaaggatgtcagatccctgatagaaaaagaggcaca 802  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42570921 ccagttggtgctttggataggatcaagctaactttgttcatcaacttgactttagtacattttttaaggatgtcagatcactgatagaaaaagaggcaca 42571020  T
Q  803 aatggcaagaaaccgctaggtattattagtctcaactagatatcaacaagtctgctgaattatgcagcagtggctagctaaaattaaactagagaagaga 902  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42571021 aatggcaagaaaccgctaggtattattagtctcaactagatatcaacaagtctgctgaattatgcagcagtggctagctaaaattaaactagagaagaga 42571120  T
Q  903 tgacgacgcatgatagttgtcggaactgcaaccaccctcacaacactaacccc 955  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42571121 tgacgacgcatgatagttgtcggaactgcaaccgccctcacaacactaacccc 42571173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 547
Target Start/End: Original strand, 42577411 - 42577952
Alignment:
Q  8 tatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtccatgatctat 107  Q
    |||||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| | ||||    
T  42577411 tatatcattgagcgatatggaaagtactttaaaactcttcctaccggcgtccattttttgatcccttttgttgataaaattgcttgcgtccataagctat 42577510  T
Q  108 ggnnnnnnnccctctatcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgtatcgaatttt 207  Q
    ||       | ||  | ||| || ||| |  |||||||||||| ||||||||  |||||||||| | |||| | |||||||||||||| ||||||  |||    
T  42577511 ggatagaaactcttaaacttaatagccagagtgctttcaccaacgataacattggcatgttcgtagatggtcggattgatgttaaggtctatcga--ttt 42577608  T
Q  208 ttatctctaattccggttaatactttttaggtgcttgttgatttgttttgtaactgcttttgttggagtgcagattgtggatcctaggcttgcttcttat 307  Q
    || ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||    
T  42577609 ttgtctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctat 42577708  T
Q  308 ggaact---gataatcccatttatgctgcccatgagctggctctatccataatccgaagtgaaatccgtaaaattactttagatgatttcaacaaggaaa 404  Q
    ||||||   ||||||||| ||||||||  |||||||||||||| | ||| ||||||   |||||||||||||||||||||||||||||||||||||||||    
T  42577709 ggaactgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtgttgaaatccgtaaaattactttagatgatttcaacaaggaaa 42577808  T
Q  405 agaacgatacactgtctnnnnnnnttatggtgagtttagtacctttaactggttgtttatgctatgttactca-tttagcattggttcattattttaata 503  Q
    |||||||||||||| ||       |||||||||||||||| | |||||||||||||||||| |||| |||||| ||||||||| |||||||||||| |      
T  42577809 agaacgatacactgcctaaaaagattatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatttgttcattatttttacc 42577908  T
Q  504 ggagcattttgatagttctgttttaggcatgcactaaaatcttg 547  Q
    ||||||||| ||||||||| ||| | ||||||| ||||||||||    
T  42577909 ggagcatttcgatagttctttttgatgcatgcattaaaatcttg 42577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 42572825 - 42572894
Alignment:
Q  241 cttgttgatttgttttgtaactgcttttgttggagtgcagattgtggatcctaggcttgcttcttatgga 310  Q
    ||||||| ||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||    
T  42572825 cttgttggtttgtttagtaactgtttttactggagtgcagattgtggatcctaagcttgcttcttatgga 42572894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 820 - 860
Target Start/End: Original strand, 42578233 - 42578273
Alignment:
Q  820 aggtattattagtctcaactagatatcaacaagtctgctga 860  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  42578233 aggtattattagtctcaactagatatcatcaagtctgctga 42578273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 42573019 - 42573070
Alignment:
Q  429 ttatggtgagtttagtacctttaactggttgtttatgctatgttactcattt 480  Q
    |||||||||||||||| |||| |||||||||||| ||||||| |||||||||    
T  42573019 ttatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt 42573070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 606 - 648
Target Start/End: Original strand, 42578045 - 42578087
Alignment:
Q  606 ggtccaacttataatttgatagttctgtttgagtccaattata 648  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  42578045 ggtccagcttataagttgatagttctgtttgagtccaattata 42578087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 42572576 - 42572661
Alignment:
Q  6 catatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgct 91  Q
    |||||||||| ||| |||||||||||||||||||| |||||||  || ||   | ||||||||| |||||| | ||||||||||||    
T  42572576 catatatcattgagcgatatggaaaatactttaaaactcttcccgccagctctctttttttgaatccttttctcgataaaattgct 42572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 42594106 - 42594189
Alignment:
Q  17 gagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtccat 100  Q
    |||||||  ||||||||||| ||  |||| ||||| ||| ||||||||||||| |||||||| ||| || ||| ||||||||||    
T  42594106 gagagattcggaaaatacttcaagactctacctacaggcgtccattttttgaatccttttgtcgatgaagttgttcgcgtccat 42594189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 591
Target Start/End: Original strand, 42577965 - 42578010
Alignment:
Q  546 tggataagtagcacataactaagttctgaaaagaatgtgcctgttt 591  Q
    |||||||| |||||  ||||||||| ||||||||||||||||||||    
T  42577965 tggataagcagcactaaactaagttatgaaaagaatgtgcctgttt 42578010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 42594366 - 42594399
Alignment:
Q  275 gtgcagattgtggatcctaggcttgcttcttatg 308  Q
    ||||||||||||||||||| ||||||||||||||    
T  42594366 gtgcagattgtggatcctaagcttgcttcttatg 42594399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 27871125 - 27871058
Alignment:
Q  265 ttttgttggagtgcagattgtggatcctaggcttgcttcttatggaactgataatcccatttatgctg 332  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||   ||| |||||| |||||||||    
T  27871125 tttttttggagtgcagattgtggatcctaaacttgcttcttatggggttgagaatcccctttatgctg 27871058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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