View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717-Insertion-2 (Length: 280)
Name: NF2717-Insertion-2
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 11225392 - 11225124
Alignment:
| Q |
8 |
cagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatgtgcagcacttatagtac |
107 |
Q |
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| T |
11225392 |
cagcttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtac |
11225293 |
T |
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| Q |
108 |
atgcataacatttaatcaaccaacacacccaaaagtatatttacagctatctttttccatcagttttcataatccttttcaattaaacaaccaacttaca |
207 |
Q |
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| T |
11225292 |
atgcataacatttaatcaatcaacacacccaaaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttaca |
11225193 |
T |
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| Q |
208 |
ttcaggtgcacatcaaacatcagttcgcagaattttatcaacaatgtgtaactcttatactacatgaaca |
277 |
Q |
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| T |
11225192 |
ttcaggtacacatcaaacattagttcgcagaa-tttatcaacaatgtgtaactcttatactacatgaaca |
11225124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 11225565 - 11225347
Alignment:
| Q |
26 |
acattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatgtgcagcacttatagtacatgcataacatttaatca |
125 |
Q |
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| T |
11225565 |
acatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatca |
11225466 |
T |
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| Q |
126 |
accaacacacccaaaagtatatttacagctatctttttccatcagttttcataatccttttcaattaaacaaccaacttacattcaggtgcacatcaaac |
225 |
Q |
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| T |
11225465 |
accaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaac |
11225366 |
T |
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| Q |
226 |
-atcagttcgcagaatttt |
243 |
Q |
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| T |
11225365 |
aatcagttcacaaaatttt |
11225347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 11225039 - 11224891
Alignment:
| Q |
8 |
cagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatgtgcagcacttatagtac |
107 |
Q |
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||||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| |||||| || ||||||||||| | | |||||| ||| |
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| T |
11225039 |
cagcttacaatcaggtaaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactac |
11224942 |
T |
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| Q |
108 |
atgcataacatttaatcaac-caacacacccaaaagtatatttacagctat |
157 |
Q |
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| T |
11224941 |
atgcacaacatttaatcaacttaacacacccaaaagtatacttacaactat |
11224891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 11225160 - 11225024
Alignment:
| Q |
78 |
tttatcaacaatgtgcagcacttatagtacatgcataacatttaatcaaccaacacacccaaaagtatatttacagctatctttttccatcagttttcat |
177 |
Q |
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||||||||||||||| | | |||||| |||||| | ||||| |||||||||||||| || |||||||| ||||| | ||||||||| || | ||| || |
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| T |
11225160 |
tttatcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcag |
11225061 |
T |
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| Q |
178 |
aatccttttcaattaaacaaccaacttacattcaggt |
214 |
Q |
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| T |
11225060 |
aatctttttcaattaaacaatcagcttacaatcaggt |
11225024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 11224985 - 11224939
Alignment:
| Q |
226 |
atcagttcgcagaattttatcaacaatgtgtaactcttatactacatg |
273 |
Q |
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| T |
11224985 |
atcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatg |
11224939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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