View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717R-Insertion-1 (Length: 890)

Name: NF2717R-Insertion-1
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717R-Insertion-1
NF2717R-Insertion-1
[»] chr6 (17 HSPs)
chr6 (9-884)||(33140866-33141731)
chr6 (724-884)||(33136168-33136324)
chr6 (10-278)||(33134982-33135243)
chr6 (243-331)||(33135359-33135448)
chr6 (200-264)||(10760849-10760913)
chr6 (396-440)||(15443690-15443734)
chr6 (359-463)||(33135206-33135307)
chr6 (558-619)||(33141673-33141734)
chr6 (334-382)||(33135249-33135297)
chr6 (394-457)||(33135171-33135233)
chr6 (287-334)||(33135173-33135220)
chr6 (565-676)||(33135921-33136032)
chr6 (388-438)||(2140503-2140553)
chr6 (404-438)||(29049888-29049922)
chr6 (394-427)||(10285178-10285211)
chr6 (396-453)||(31115480-31115537)
chr6 (568-618)||(33135662-33135714)
[»] chr2 (5 HSPs)
chr2 (390-438)||(19613635-19613683)
chr2 (200-231)||(11977705-11977736)
chr2 (407-438)||(44605161-44605192)
chr2 (408-438)||(2073949-2073979)
chr2 (202-231)||(41047863-41047892)
[»] chr8 (6 HSPs)
chr8 (396-436)||(14134694-14134734)
chr8 (409-440)||(8798851-8798882)
chr8 (407-438)||(14227228-14227259)
chr8 (407-438)||(37225765-37225796)
chr8 (408-438)||(3508059-3508089)
chr8 (401-438)||(34201068-34201105)
[»] chr5 (1 HSPs)
chr5 (408-475)||(18607081-18607149)
[»] chr4 (4 HSPs)
chr4 (398-438)||(10546145-10546185)
chr4 (408-438)||(19230331-19230361)
chr4 (407-453)||(23915135-23915181)
chr4 (399-475)||(31243532-31243609)
[»] chr1 (2 HSPs)
chr1 (408-440)||(48785284-48785316)
chr1 (408-453)||(43609825-43609870)
[»] chr7 (1 HSPs)
chr7 (803-848)||(31020637-31020682)
[»] chr3 (1 HSPs)
chr3 (198-231)||(46801770-46801803)


Alignment Details
Target: chr6 (Bit Score: 805; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 9 - 884
Target Start/End: Original strand, 33140866 - 33141731
Alignment:
Q  9 attattaataggatgttgaaggagaatgttgataatgggattatggtttgtcagaataaattatctcctgctgcgcgtaaagctgttgccggaatgagtt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33140866 attattaataggatgttgaaggagaatgttgataatgggattatggtttgtcagaataaattatctcctgctgcgcgtaaagctgttgctggaatgagtt 33140965  T
Q  109 caattggttctaagcggcttgaagtctttatggtaattgtttctgtctttcttttgtagtttctgaattgttggatagacaagttgcaccaacactgaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33140966 caattggttctaagcggcttgaagtctttatggtaattgttcctgtctttcttttgtagtttctgaattgttggatagacaagttgcaccaacactaaca 33141065  T
Q  209 cgtcgacactgataataatttgataaactaacatattcaatgtgatgacatgtgtcatgcactgaaacggacattgacacgtcgacactgataataagtt 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141066 cgtcgacactgataataatttgagaaactaacatattcaatgtgatgacatgtgtcatgcactgaaacggacattgacacgtcgacactgataataagtt 33141165  T
Q  309 gtgaaataacgtaattcaatgtgatctgataataagttgtgaaaataatgtaattcaatgtgatcacatgtgtcatgctacacatatacgtcgacaataa 408  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141166 gtgaaataacgtaattcaatgtgatctggtaataagttgtgaaaataatgtaattcaatgtgatcacatgtgtcatgctacacatatacgtcgacaataa 33141265  T
Q  409 taataatttgagaaaataacataattcaatatgctcacatgtgtcatgctgtgttggtgtcggacactgacacatgtccagtacacacttcaatgtggtc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141266 taataatttgagaaaataacataattcaatatgctcacatgtgtcatgctgtgttggtgtcggacactgacacatgtccagtacacacttcaatgtggtc 33141365  T
Q  509 atatgtgtcatgctgtgtcagtgttggacacggagatgtgtttagtccgaccttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtag 608  Q
    |||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141366 ata----------tgtgtcagtgttggacacggagatgtgtttagtccgaccttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtag 33141455  T
Q  609 gtgttggaagacggtgttgaaaagcgtgatgattggttaagttaagtagataattgattaagtgtgtgtttggtcctgaattgttagataatatgaagca 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141456 gtgttggaagacggtgttgaaaagcgtgatgattggttaagttaagtagataattgattaagtgtgtgtttggtcctgaattgttagataatatgaagca 33141555  T
Q  709 ctgacatgagcactgacacgtcaacaatggtaatattttgaggaagtaacataatttagtggaattgcatgtgtctgtgtcggtgtaggacacagacacg 808  Q
    | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141556 ccgacatgggcactgacacgtcaacaatggtaatattttgaggaagtgacataatttagtggaattgcatgtgtctgtgtcggtgtaggacacagacacg 33141655  T
Q  809 tgtaggacagcgggcacaccttccatcaaaagtgtcggtgctatagagttaggtagcttgatgtgtaggtggtgga 884  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33141656 tgtaggacagcgggcacaccttccatcaaaagtgtcggtgctatagagttagatagcttgatgtgtaggtggtgga 33141731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 724 - 884
Target Start/End: Original strand, 33136168 - 33136324
Alignment:
Q  724 acacgtcaacaatggtaatattttgaggaagtaacataatttagtggaattgcatgtgtctgtgtcggtgtaggacacagacacgtgtaggacagcgggc 823  Q
    ||||||||||| | |||||||||||||    | | || |||| |||||||||| ||||||||||| ||| |||||||| |||| |||||||||||||| |    
T  33136168 acacgtcaacactagtaatattttgag----tgaaatgattttgtggaattgcttgtgtctgtgttggtttaggacactgacatgtgtaggacagcggcc 33136263  T
Q  824 acaccttccatcaaaagtgtcggtgctatagagttaggtagcttgatgtgtaggtggtgga 884  Q
    || |||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||    
T  33136264 acgccttccatcaaaagtgtccgagctatagagttaggtagcttgatgtctaggtgttgga 33136324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 33134982 - 33135243
Alignment:
Q  10 ttattaataggatgttgaaggagaatgttgataatgggattatggtttgtcagaataaattatctcctgctgcgcgtaaagctgttgccggaatgagttc 109  Q
    |||||| |||||||||| | ||||||||||||| ||||||| |||||||||||| ||||||||||| |  |||  | |  |||||| | | |||||||||    
T  33134982 ttattactaggatgttgcaagagaatgttgatagtgggattttggtttgtcagactaaattatctcattatgctagaagtgctgttactgaaatgagttc 33135081  T
Q  110 aattggttctaagcggcttgaagtctttatggtaattgtttctgtctttcttttgtagtttctgaattgttggatagacaagttgcaccaacactgacac 209  Q
    | ||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||  ||| | ||||||| |||| | | |       | |||||| ||    
T  33135082 agttggttctaagcgccttgaagtctttctggtaattgtttctctctttgttttgtcattttttaattgttagata-atacg------aatcactgatac 33135174  T
Q  210 gtcgacactgataataatttgataaactaacat-attcaatgtgatgacatgtgtcatgcactgaaacgg 278  Q
    ||||||||||||||| |||||| ||| |||||| |||||||||||| | |||||||||||||||| ||||    
T  33135175 gtcgacactgataatgatttgagaaa-taacataattcaatgtgatcatatgtgtcatgcactgacacgg 33135243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 33135359 - 33135448
Alignment:
Q  243 attcaatgtgatgacatgtgtcatgcactgaaacggacattgacacgtcgacactgataataagttgtg-aaataacgtaattcaatgtg 331  Q
    |||||||||||| ||||| |||||||| ||| | ||||| ||||| |||||| |||||||||| ||||| |||||||  |||||||||||    
T  33135359 attcaatgtgatcacatgggtcatgcagtgacagggacactgacatgtcgactctgataataatttgtgaaaataacacaattcaatgtg 33135448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 10760913 - 10760849
Alignment:
Q  200 acactgacacgtcgacactgataataatttgataaactaacatattcaatgtgatgacatgtgtc 264  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||| ||||| || ||| |||||    
T  10760913 acactgacacgtcgacactgataataatttgagaaaatgacatattgaatgtaatcacacgtgtc 10760849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 15443690 - 15443734
Alignment:
Q  396 acgtcgacaataataataatttgagaaaataacataattcaatat 440  Q
    |||||||||  ||||||||||||||||||||||||||||||||||    
T  15443690 acgtcgacatcaataataatttgagaaaataacataattcaatat 15443734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 359 - 463
Target Start/End: Original strand, 33135206 - 33135307
Alignment:
Q  359 taattcaatgtgatcacatgtgtcatgctacacatatacgtcgacaataataataatttgagaaaataacataattcaatatgctcacatgtgtcatgct 458  Q
    |||||||||||||||| |||||||||||   ||  | ||| ||||  | ||||||||||| ||||||||||||||||||| || |||||| ||||  |||    
T  33135206 taattcaatgtgatcatatgtgtcatgc---actgacacggcgaccctgataataatttgtgaaaataacataattcaatgtgatcacatttgtcgggct 33135302  T
Q  459 gtgtt 463  Q
    |||||    
T  33135303 gtgtt 33135307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 619
Target Start/End: Original strand, 33141673 - 33141734
Alignment:
Q  558 accttctatcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttggaaga 619  Q
    |||||| |||| |||||| ||||||  | ||||||||||||||||||||||||| |||||||    
T  33141673 accttccatcaaaagtgtcggtgctatagagttagatagcttgatgtgtaggtggtggaaga 33141734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 33135249 - 33135297
Alignment:
Q  334 ctgataataagttgtgaaaataatgtaattcaatgtgatcacatgtgtc 382  Q
    |||||||||| ||||||||||||  ||||||||||||||||||| ||||    
T  33135249 ctgataataatttgtgaaaataacataattcaatgtgatcacatttgtc 33135297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 33135171 - 33135233
Alignment:
Q  394 atacgtcgacaataataataatttgagaaaataacataattcaatatgctcacatgtgtcatgc 457  Q
    ||||||||||| | ||||| |||||||||| |||||||||||||| || ||| |||||||||||    
T  33135171 atacgtcgacactgataatgatttgagaaa-taacataattcaatgtgatcatatgtgtcatgc 33135233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 33135173 - 33135220
Alignment:
Q  287 acgtcgacactgataataagttgtgaaataacgtaattcaatgtgatc 334  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||||    
T  33135173 acgtcgacactgataatgatttgagaaataacataattcaatgtgatc 33135220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 676
Target Start/End: Original strand, 33135921 - 33136032
Alignment:
Q  565 atcagaagtgttggtgctgcaaagttagatagcttgatgtgtaggtgttggaagacggtgttg--aaaagcgtgatgattggttaagttaagtagataat 662  Q
    ||||||||||| ||||||  |  ||||||||  ||||||||||||| || ||||| ||| ||   ||||| |||||||||||||||||||| |||||||     
T  33135921 atcagaagtgtcggtgctatagggttagata--ttgatgtgtaggtattcgaagaaggtatttgaaaaagggtgatgattggttaagttaattagataac 33136018  T
Q  663 tgattaagtgtgtg 676  Q
    || ||| |||||||    
T  33136019 tggttaggtgtgtg 33136032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 2140553 - 2140503
Alignment:
Q  388 acacatatacgtcgacaataataataatttgagaaaataacataattcaat 438  Q
    ||||| |||| |||||| | |||||||||||||||||| ||||||||||||    
T  2140553 acacaaatacatcgacattgataataatttgagaaaatgacataattcaat 2140503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 29049888 - 29049922
Alignment:
Q  404 aataataataatttgagaaaataacataattcaat 438  Q
    |||||||||||||||||||||| ||||||||||||    
T  29049888 aataataataatttgagaaaattacataattcaat 29049922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 10285211 - 10285178
Alignment:
Q  394 atacgtcgacaataataataatttgagaaaataa 427  Q
    |||||||||||||||||||| |||||||||||||    
T  10285211 atacgtcgacaataataatactttgagaaaataa 10285178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 31115480 - 31115537
Alignment:
Q  396 acgtcgacaataataataatttgagaaaataacataattcaatatgctcacatgtgtc 453  Q
    |||||||||  |||||||||||||| |||||||| |||||||| || ||| |||||||    
T  31115480 acgtcgacaccaataataatttgagtaaataacacaattcaatgtgatcatatgtgtc 31115537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 33135662 - 33135714
Alignment:
Q  568 agaagtgttggtgctgcaaagttagata--gcttgatgtgtaggtgttggaag 618  Q
    ||||||||  ||||| ||||||||||||  |||||||||||||||||||||||    
T  33135662 agaagtgtaagtgctacaaagttagatatagcttgatgtgtaggtgttggaag 33135714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 19613683 - 19613635
Alignment:
Q  390 acatatacgtcgacaataataataatttgagaaaataacataattcaat 438  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  19613683 acatatacgtcgacactcataataatttgagaaaataacataattcaat 19613635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 11977705 - 11977736
Alignment:
Q  200 acactgacacgtcgacactgataataatttga 231  Q
    ||||||||||||||||||||||||||||||||    
T  11977705 acactgacacgtcgacactgataataatttga 11977736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 438
Target Start/End: Complemental strand, 44605192 - 44605161
Alignment:
Q  407 aataataatttgagaaaataacataattcaat 438  Q
    ||||||||||||||||||||||||||||||||    
T  44605192 aataataatttgagaaaataacataattcaat 44605161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 438
Target Start/End: Original strand, 2073949 - 2073979
Alignment:
Q  408 ataataatttgagaaaataacataattcaat 438  Q
    |||||||||||||||||||||||||||||||    
T  2073949 ataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 41047863 - 41047892
Alignment:
Q  202 actgacacgtcgacactgataataatttga 231  Q
    ||||||||||||||||||||||||||||||    
T  41047863 actgacacgtcgacactgataataatttga 41047892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 14134694 - 14134734
Alignment:
Q  396 acgtcgacaataataataatttgagaaaataacataattca 436  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  14134694 acgtcgacaatactaataatttgagaaaatcacataattca 14134734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 440
Target Start/End: Complemental strand, 8798882 - 8798851
Alignment:
Q  409 taataatttgagaaaataacataattcaatat 440  Q
    ||||||||||||||||||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatat 8798851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 438
Target Start/End: Original strand, 14227228 - 14227259
Alignment:
Q  407 aataataatttgagaaaataacataattcaat 438  Q
    ||||||||||||||||||||||||||||||||    
T  14227228 aataataatttgagaaaataacataattcaat 14227259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 438
Target Start/End: Complemental strand, 37225796 - 37225765
Alignment:
Q  407 aataataatttgagaaaataacataattcaat 438  Q
    ||||||||||||||||||||||||||||||||    
T  37225796 aataataatttgagaaaataacataattcaat 37225765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 438
Target Start/End: Original strand, 3508059 - 3508089
Alignment:
Q  408 ataataatttgagaaaataacataattcaat 438  Q
    |||||||||||||||||||||||||||||||    
T  3508059 ataataatttgagaaaataacataattcaat 3508089  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 34201105 - 34201068
Alignment:
Q  401 gacaataataataatttgagaaaataacataattcaat 438  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  34201105 gacactaataataatttgagaaaatgacataattcaat 34201068  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 18607149 - 18607081
Alignment:
Q  408 ataataatttgagaaaataacataattcaatatgctcacatgtgtcatg-ctgtgttggtgtcggacac 475  Q
    ||||||||||||||||||||||||||||||| |  ||| | ||||| || ||||||||||||| |||||    
T  18607149 ataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgacac 18607081  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 10546145 - 10546185
Alignment:
Q  398 gtcgacaataataataatttgagaaaataacataattcaat 438  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  10546145 gtcgacaatgataataatttgagaaaatgacataattcaat 10546185  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 438
Target Start/End: Complemental strand, 19230361 - 19230331
Alignment:
Q  408 ataataatttgagaaaataacataattcaat 438  Q
    |||||||||||||||||||||||||||||||    
T  19230361 ataataatttgagaaaataacataattcaat 19230331  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 23915135 - 23915181
Alignment:
Q  407 aataataatttgagaaaataacataattcaatatgctcacatgtgtc 453  Q
    |||||| |||||||||||||||||||||||||||  | |||||||||    
T  23915135 aataatcatttgagaaaataacataattcaatataattacatgtgtc 23915181  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 31243609 - 31243532
Alignment:
Q  399 tcgacaataataataatttgagaaaataacataattcaatatgctcacatgtgtcatg-ctgtgttggtgtcggacac 475  Q
    |||||| | |||||||||||||||||| |||||||||| | |  ||| | |||||||| | |||||||||||||||||    
T  31243609 tcgacacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacac 31243532  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 48785316 - 48785284
Alignment:
Q  408 ataataatttgagaaaataacataattcaatat 440  Q
    |||||||||||||||||||||||||||||||||    
T  48785316 ataataatttgagaaaataacataattcaatat 48785284  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 43609870 - 43609825
Alignment:
Q  408 ataataatttgagaaaataacataattcaatatgctcacatgtgtc 453  Q
    ||||||||||||||||||||||||||| ||| |  |||||||||||    
T  43609870 ataataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 848
Target Start/End: Complemental strand, 31020682 - 31020637
Alignment:
Q  803 gacacgtgtaggacagcgggcacaccttccatcaaaagtgtcggtg 848  Q
    ||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  31020682 gacacgtgttggacaccggacacaccttccatcagaagtgtcggtg 31020637  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 46801803 - 46801770
Alignment:
Q  198 caacactgacacgtcgacactgataataatttga 231  Q
    |||||||||||||| |||||||||||||||||||    
T  46801803 caacactgacacgttgacactgataataatttga 46801770  T

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