View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717R-Insertion-12 (Length: 313)
Name: NF2717R-Insertion-12
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717R-Insertion-12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 47817267 - 47817571
Alignment:
| Q |
9 |
ctatagtggtgtggcgcagaaaaaatgcagccaccacacccagccacgttgaagggttgattggttttgtaataatattaagaaaccctaaacctttctc |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47817267 |
ctatagcggtgtggcgcagaaaaaatgcagccaccacacccagccacgttgaagggttgattgattttgtaataatattaagaaaccctaaacctttctc |
47817366 |
T |
|
| Q |
109 |
aacaacacagcctcatctcccttctcttcatccattcattcaacgcagcctcaaccctaactccttcctgattgagtgattcacatcaacaacacagctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47817367 |
aacaacacagcctcatctcccttctcttcatccattcattcaacgcagcctcaaccctaactccttcctgattgagcgattcacatcaacaacacagctt |
47817466 |
T |
|
| Q |
209 |
catctcttccttctcttcatcgcaacacagctgagttgaactcaacaactcaactttgtctcttcccttctctgcatcacaacaaagccacatgttcatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47817467 |
catctcttccttctcttcatcgcaacacagctgagttgaactcaacaactcaactttgtctcttcccttctctgcatcacaacaaagccacatgttcatt |
47817566 |
T |
|
| Q |
309 |
tcttc |
313 |
Q |
| |
|
||||| |
|
|
| T |
47817567 |
tcttc |
47817571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University