View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717R-Insertion-13 (Length: 243)
Name: NF2717R-Insertion-13
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717R-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 34506006 - 34506226
Alignment:
| Q |
9 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
108 |
Q |
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| T |
34506006 |
tgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
34506105 |
T |
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| Q |
109 |
atgtctactgtcttcttccgggtaatagttacgttgttcttgtttaccgtcttagactcacacacatacatatgatgagtgaatatattaccatttgtgt |
208 |
Q |
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| T |
34506106 |
atgtctactgtcttcttccgggtaatagttacgttgttcttgtttactgtcttagactcacacacatata--------------atattaccatttgtgt |
34506191 |
T |
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| Q |
209 |
catcattttgtttgtttcttttgcgggttctttcc |
243 |
Q |
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| T |
34506192 |
catcattttgtttgtttcttttgcgggttctttcc |
34506226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 34516136 - 34516265
Alignment:
| Q |
9 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
108 |
Q |
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| T |
34516136 |
tgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcatcggtaccaaatgccactacaagcttttctaggaaagaatca |
34516235 |
T |
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| Q |
109 |
atgtctactgtcttcttccgggtaatagtt |
138 |
Q |
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| T |
34516236 |
gtgtctactgtgattttccaggtaatagtt |
34516265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 4690107 - 4690036
Alignment:
| Q |
9 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgt |
80 |
Q |
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| T |
4690107 |
tgtgggtgattcactgagtctgaacatgtgggaatcactgtcgtgtatgattcatgcgtcggtgcccaatgt |
4690036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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