View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717R-Insertion-2 (Length: 870)

Name: NF2717R-Insertion-2
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717R-Insertion-2
NF2717R-Insertion-2
[»] chr8 (11 HSPs)
chr8 (9-430)||(7956934-7957355)
chr8 (586-860)||(7956445-7956717)
chr8 (425-546)||(7956762-7956883)
chr8 (789-867)||(17722518-17722596)
chr8 (789-865)||(44223427-44223503)
chr8 (789-867)||(3767754-3767832)
chr8 (788-858)||(9040426-9040496)
chr8 (793-866)||(20860427-20860500)
chr8 (793-867)||(34760904-34760979)
chr8 (585-625)||(7956644-7956684)
chr8 (788-836)||(35948826-35948874)
[»] chr1 (10 HSPs)
chr1 (791-867)||(25785763-25785839)
chr1 (788-841)||(16584998-16585051)
chr1 (621-663)||(34148499-34148541)
chr1 (791-867)||(18461120-18461197)
chr1 (793-837)||(8083990-8084034)
chr1 (793-841)||(32678554-32678602)
chr1 (789-864)||(4919491-4919566)
chr1 (788-865)||(11619933-11620004)
chr1 (789-822)||(33857601-33857634)
chr1 (789-822)||(33923289-33923322)
[»] chr7 (4 HSPs)
chr7 (789-839)||(3997078-3997128)
chr7 (789-842)||(27227036-27227089)
chr7 (789-867)||(39695087-39695170)
chr7 (789-867)||(7994955-7995033)
[»] chr2 (9 HSPs)
chr2 (793-867)||(4638168-4638242)
chr2 (789-867)||(27866622-27866699)
chr2 (791-836)||(13852408-13852453)
chr2 (789-864)||(37630343-37630415)
chr2 (832-867)||(31111466-31111501)
chr2 (789-867)||(36009179-36009257)
chr2 (818-867)||(10721926-10721975)
chr2 (788-837)||(12894051-12894100)
chr2 (792-857)||(38606980-38607045)
[»] chr4 (5 HSPs)
chr4 (794-867)||(13207474-13207547)
chr4 (788-841)||(23108045-23108098)
chr4 (789-867)||(42141257-42141336)
chr4 (793-841)||(53393289-53393337)
chr4 (789-838)||(39839104-39839153)
[»] chr5 (4 HSPs)
chr5 (789-867)||(31895896-31895984)
chr5 (789-841)||(16746674-16746726)
chr5 (799-857)||(41092105-41092163)
chr5 (792-841)||(19947711-19947760)
[»] chr3 (4 HSPs)
chr3 (792-841)||(44471020-44471069)
chr3 (789-836)||(26757593-26757640)
chr3 (832-867)||(46892657-46892692)
chr3 (788-854)||(22240516-22240582)
[»] scaffold0565 (1 HSPs)
scaffold0565 (796-867)||(1942-2013)
[»] scaffold0070 (1 HSPs)
scaffold0070 (789-836)||(33729-33776)
[»] scaffold0002 (1 HSPs)
scaffold0002 (788-854)||(344452-344518)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 7957355 - 7956934
Alignment:
Q  9 gaatgaatggctaggcttgaacgtgcaaaaccagcttagtcagagggaatagtaagaacaatcatggaccactggcagctatattatttatatttgtgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||     
T  7957355 gaatgaatggctaggcttgaacgtgcaaaaccagcttagtcagagggaatagtaagaactatcatggaccactggcagctatattatttatatatgtgac 7957256  T
Q  109 tgtgaaccatatacatgaattttatttgtttatatatgtgattgaggatcttgttttttagtttcttggaccacaaaaattgactcatacatgacttata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7957255 tgtgaaccatatacatgaattttatttgtttatatatgtgattgaggatcttgttttttagtttcttggaccacaaaaattgactcatacatgacttata 7957156  T
Q  209 acaaatccaaatttatgtttccccttcagaaacgttgcatatgctagtgtttcgtcgatttcatgtatggtatatatggtatgaactagtattcatatac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7957155 acaaatccaaatttatgtttccccttcagaaacgttgcatatgctagtgtttcgtcgatttcatgtatggtatatatggtatgaactagtattcatatac 7957056  T
Q  309 ttctttatttttcttttccatttttgttgctctagtaaatacgataccattattatgagttattatagctagaccgtcaccaaaacttacagtgttaatg 408  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  7957055 tgctttatttttcttttccatttttgttgctctagtaaatacgataccattattatgagttattatagctagaccgtcaccaaaacttacagtgataacg 7956956  T
Q  409 aaactgacccagttgataagga 430  Q
    ||||||||||||||||||||||    
T  7956955 aaactgacccagttgataagga 7956934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 586 - 860
Target Start/End: Complemental strand, 7956717 - 7956445
Alignment:
Q  586 aataattgggtatattttcacatttaactactctaataattgggtatattttcatgtttaactactctaataatatatttaactacgtactccaaattga 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  7956717 aataattgggtatattttcacatttaactactctaataattgggtatattttcatgtttaactactctaataatat--ttaactacatactccaaattga 7956620  T
Q  686 aagttagtacgtacttagtacaaacatgaaagaaagttttataacttgaatgattaattttattcgtattattttgacacttttgatctacaacaagtac 785  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||    
T  7956619 aagttagtacgtacttagtacaaacatgaaagaaagttttatcacttgaatgattaattttatgtgtcttattttgacacttttgatctacgacaagtac 7956520  T
Q  786 acgtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgctt 860  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  7956519 acgtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgctt 7956445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 425 - 546
Target Start/End: Complemental strand, 7956883 - 7956762
Alignment:
Q  425 taaggacattactgatgaataatatgtaattacctctaccaactttctttaaaccttaaaacctgtcatgaccttgatgaacttcatttaaattcaactc 524  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7956883 taagaacattactgatggataatatgtaattacctctaccaactttctttaaaccttaaaacctgtcatgaccttgatgaacttcatttaaattcaactc 7956784  T
Q  525 atctaaacttttcaccacaaag 546  Q
    ||||||||||||||||||||||    
T  7956783 atctaaacttttcaccacaaag 7956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 789 - 867
Target Start/End: Complemental strand, 17722596 - 17722518
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||    
T  17722596 taggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccggaaaaatatccaaccttgtttggttcgg 17722518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 789 - 865
Target Start/End: Complemental strand, 44223503 - 44223427
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttc 865  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||  || |||| |||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttc 44223427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 789 - 867
Target Start/End: Complemental strand, 3767832 - 3767754
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||| |||||||||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||| || ||||||    
T  3767832 taggagtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaaaagtatccgaccttgtttagttcgg 3767754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 788 - 858
Target Start/End: Original strand, 9040426 - 9040496
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgc 858  Q
    |||||||| |||| |||||| | |||||| ||||||||||||||||||||||||||  |||||||||||||    
T  9040426 gtaggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaaaatgtatccgaccttgc 9040496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 793 - 866
Target Start/End: Complemental strand, 20860500 - 20860427
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcg 866  Q
    ||||||||||||||| |||||||| |||||| ||||| | ||||| |||||| |||| ||||||| ||||||||    
T  20860500 ggtgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaactgaaaaattatctgaccttgtttggttcg 20860427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 793 - 867
Target Start/End: Complemental strand, 34760979 - 34760904
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaa-tatccgaccttgcttggttcgg 867  Q
    |||||||| |||||| |||||||| |||||| ||||| ||||||||||||||| |||| || |||| |||||||||    
T  34760979 ggtgtaagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccgaaaaaagtatctgatcttgtttggttcgg 34760904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 625
Target Start/End: Complemental strand, 7956684 - 7956644
Alignment:
Q  585 taataattgggtatattttcacatttaactactctaataat 625  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  7956684 taataattgggtatattttcatgtttaactactctaataat 7956644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 788 - 836
Target Start/End: Original strand, 35948826 - 35948874
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 836  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||||||    
T  35948826 gtaggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaa 35948874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 791 - 867
Target Start/End: Original strand, 25785763 - 25785839
Alignment:
Q  791 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    ||||||||||||||||| |||||||||| ||||  |||| | ||||||||||||||||||||||||| |||||||||    
T  25785763 ggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcgg 25785839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 788 - 841
Target Start/End: Complemental strand, 16585051 - 16584998
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  16585051 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 16584998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 663
Target Start/End: Complemental strand, 34148541 - 34148499
Alignment:
Q  621 ataattgggtatattttcatgtttaactactctaataatatat 663  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  34148541 ataattgggtatattttcatgtttaactactctgaaaatatat 34148499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 867
Target Start/End: Original strand, 18461120 - 18461197
Alignment:
Q  791 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa-aaaatatccgaccttgcttggttcgg 867  Q
    ||||||||||||||||  |||||||||| |||| | |||||||||||| ||  ||||||||||||||| || ||||||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaatatccgaccttgtttagttcgg 18461197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 793 - 837
Target Start/End: Original strand, 8083990 - 8084034
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac 837  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||    
T  8083990 ggtgtaagtggttcggacataaccaacgaaatcgaaagtccaaac 8084034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 793 - 841
Target Start/End: Complemental strand, 32678602 - 32678554
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    ||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  32678602 ggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaa 32678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 864
Target Start/End: Original strand, 4919491 - 4919566
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggtt 864  Q
    ||||||||||||||||  | |||||||| | |||| ||||||| |||||||||||  |||| |||||||| |||||    
T  4919491 taggggtgtaagtggtagggacaaaaccgacgaaaccgaaagttcaaaccgaaaaggtatctgaccttgcctggtt 4919566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 865
Target Start/End: Original strand, 11619933 - 11620004
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttc 865  Q
    |||||||||||||||||||| |||||||||| |||| |||      ||||| ||||||||||||| |||| |||||||    
T  11619933 gtaggggtgtaagtggttcggacaaaaccaacgaaaccga------aaaccaaaaaaatatccgatcttgtttggttc 11620004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 822
Target Start/End: Original strand, 33857601 - 33857634
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaa 822  Q
    ||||||||||||||||||| ||||||||||||||    
T  33857601 taggggtgtaagtggttcggacaaaaccaatgaa 33857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 822
Target Start/End: Complemental strand, 33923322 - 33923289
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaa 822  Q
    ||||||||||||||||||| ||||||||||||||    
T  33923322 taggggtgtaagtggttcggacaaaaccaatgaa 33923289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 789 - 839
Target Start/End: Complemental strand, 3997128 - 3997078
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg 839  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccg 3997078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 789 - 842
Target Start/End: Complemental strand, 27227089 - 27227036
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa 842  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaa 27227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 39695087 - 39695170
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagt-----ccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||||||||||||||  ||||||||| |||| |||||||     |||||||||| | ||||||||||||| |||||||||    
T  39695087 taggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaacccaaaccgaagagatatccgaccttgtttggttcgg 39695170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 7994955 - 7995033
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||||||  ||||||||  ||||||| ||||  || ||||||||| ||||||||||  ||||||| |||||||||    
T  7994955 taggggtgtaaacggttcgtattaaaccaacgaaactgatagtccaaactgaaaaaatatttgaccttgtttggttcgg 7995033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 793 - 867
Target Start/End: Original strand, 4638168 - 4638242
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||| |||||  || ||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||    
T  4638168 ggtgtaagcggttcagactaaaccaacgaaaccgaaagtccaaaccgaaaaaatatccgaccttgttcggttcgg 4638242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 27866622 - 27866699
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    ||||||||||||||||||| |||||| | || ||| ||||| ||||||||| |||| ||||||||||||||||||||||    
T  27866622 taggggtgtaagtggttcggacaaaatcgataaaaccgaaaatccaaaccg-aaaagtatccgaccttgcttggttcgg 27866699  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 836
Target Start/End: Complemental strand, 13852453 - 13852408
Alignment:
Q  791 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 836  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaa 13852408  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 864
Target Start/End: Original strand, 37630343 - 37630415
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggtt 864  Q
    |||||||||||||| |||| |||||||| |||||| ||||   ||||||||||||| ||||  |||||||||||||    
T  37630343 taggggtgtaagtgattcggacaaaaccgatgaaaccgaa---ccaaaccgaaaaagtatcgaaccttgcttggtt 37630415  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Original strand, 31111466 - 31111501
Alignment:
Q  832 ccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||||||||||||||||||||| |||||||||    
T  31111466 ccaaaccgaaaaaatatccgaccttgtttggttcgg 31111501  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 36009179 - 36009257
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||  |||| ||||| ||||||| || |||||| ||||||||||  |||||||||||||| |||| || ||||||    
T  36009179 taggggttcaagtagttcggacaaaactaacgaaatcaaaagtccaaattgaaaaaatatccgatcttgtttagttcgg 36009257  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 818 - 867
Target Start/End: Original strand, 10721926 - 10721975
Alignment:
Q  818 atgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||| ||||| |||||||||||||| |||| ||||||| |||||||||    
T  10721926 atgaaaccgaaaatccaaaccgaaaaagtatctgaccttgtttggttcgg 10721975  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 788 - 837
Target Start/End: Complemental strand, 12894100 - 12894051
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac 837  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||    
T  12894100 gtaggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaac 12894051  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 857
Target Start/End: Original strand, 38606980 - 38607045
Alignment:
Q  792 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttg 857  Q
    ||||||||| |||||  |||||| ||| ||||  | |||||||||||||||| |||||||||||||    
T  38606980 gggtgtaagcggttcagacaaaatcaacgaaactgtaagtccaaaccgaaaatatatccgaccttg 38607045  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 794 - 867
Target Start/End: Complemental strand, 13207547 - 13207474
Alignment:
Q  794 gtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    ||||||| |||||| |||||||| |||||||||||| |||||||||||||| |||| || |||| |||||||||    
T  13207547 gtgtaagcggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaaaagtatctgatcttgtttggttcgg 13207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 788 - 841
Target Start/End: Complemental strand, 23108098 - 23108045
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  23108098 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 23108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 42141257 - 42141336
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg-aaaaaatatccgaccttgcttggttcgg 867  Q
    |||||| |||||||||| | |||||||| |||||| ||||| ||||||||| ||||||||| |||||||  |||||||||    
T  42141257 taggggcgtaagtggttaggacaaaaccgatgaaaccgaaaatccaaaccgaaaaaaatattcgaccttctttggttcgg 42141336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 793 - 841
Target Start/End: Complemental strand, 53393337 - 53393289
Alignment:
Q  793 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    ||||||||||||||| |||||||| |||||| ||||| |||||||||||    
T  53393337 ggtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaa 53393289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 838
Target Start/End: Complemental strand, 39839153 - 39839104
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc 838  Q
    ||||||||||||||||||| || ||||| |||||| ||||| ||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaacc 39839104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 789 - 867
Target Start/End: Original strand, 31895896 - 31895984
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagt----------ccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    ||||||||||||||||||| ||||||||||  |||||||||||          |||||||||||||||||||||||||| |||||||||    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcgg 31895984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 789 - 841
Target Start/End: Complemental strand, 16746726 - 16746674
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||| ||||||||    
T  16746726 tagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaa 16746674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 799 - 857
Target Start/End: Complemental strand, 41092163 - 41092105
Alignment:
Q  799 agtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttg 857  Q
    ||||||||| ||||||||||||||| |||||||| |||| |||||  |||| |||||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaactgaaaaggtatctgaccttg 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 792 - 841
Target Start/End: Original strand, 19947711 - 19947760
Alignment:
Q  792 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    |||||||||||||||| |||||| ||| |||  |||||||||||||||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaa 19947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 792 - 841
Target Start/End: Original strand, 44471020 - 44471069
Alignment:
Q  792 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 841  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaa 44471069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 789 - 836
Target Start/End: Original strand, 26757593 - 26757640
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 836  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaa 26757640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Original strand, 46892657 - 46892692
Alignment:
Q  832 ccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||||||||||||||||||||| |||||||||    
T  46892657 ccaaaccgaaaaaatatccgaccttgtttggttcgg 46892692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 854
Target Start/End: Original strand, 22240516 - 22240582
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 854  Q
    |||| |||||||| | ||||  ||||||| |||||||||||||  |||||||||||| |||||||||    
T  22240516 gtagtggtgtaagcgattcggtcaaaaccgatgaaatcgaaaggtcaaaccgaaaaagtatccgacc 22240582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 796 - 867
Target Start/End: Complemental strand, 2013 - 1942
Alignment:
Q  796 gtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcgg 867  Q
    |||||||||||| |||||| ||| |||| | ||||| ||||  ||||||||||||||||||| |||||||||    
T  2013 gtaagtggttcggacaaaatcaacgaaaccaaaagttcaaattgaaaaaatatccgaccttgtttggttcgg 1942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 836
Target Start/End: Original strand, 33729 - 33776
Alignment:
Q  789 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 836  Q
    ||||||||||||||||||| | |||||||||||||  |||||||||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaa 33776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 854
Target Start/End: Complemental strand, 344518 - 344452
Alignment:
Q  788 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 854  Q
    |||||||||||||||||||| ||||||   |||||| ||||| |||||||| ||||| ||| |||||    
T  344518 gtaggggtgtaagtggttcggacaaaagtgatgaaaccgaaaatccaaaccaaaaaagtattcgacc 344452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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