View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717R-Insertion-3 (Length: 843)
Name: NF2717R-Insertion-3
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717R-Insertion-3 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 70 - 843
Target Start/End: Complemental strand, 18169579 - 18168805
Alignment:
| Q |
70 |
ttttatcaaatattttattatgattttttcgacagaataattttagattgaaatggtattagctaaa-attttattttcaaattctatttttgccagaaa |
168 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
18169579 |
ttttatcaaatattttattaaggttttttcgacaaaataattttagattgaaatggtattagctagagattttattttcaaattctatttttgccagaaa |
18169480 |
T |
|
| Q |
169 |
catggagatatctcatgctctagaaatgcaaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataatgtgatatcatgattaaaat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18169479 |
catggagatatctcatgctctagaaatgcaaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataatgtgatatcatgaataaaac |
18169380 |
T |
|
| Q |
269 |
ttgcttcaatcataattctaagtacatttttggattgacagtgagtttggtagaatcacagtgtaccaccgtgatttcgtcaaatacattgtgtatccaa |
368 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18169379 |
ttgattcaatcataattctaagtacatttttggattgacagtgtgtttggtagaatgacagtgtaccaccgtgatttcgtcaaatacattgtgtatccaa |
18169280 |
T |
|
| Q |
369 |
atatgcactaaatgttgcataagtacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaatcgaagctcaaggaaaatat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
18169279 |
atatgcactaaatgttgcataagtacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaattgacgctcaaggaaaatat |
18169180 |
T |
|
| Q |
469 |
ttacaatcggtactaacgaaggcgcaggaagccctctctggatacaattcttcaccaattgggataaaactcacagaagatgaactctctcagttggtta |
568 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
18169179 |
ttacaatcggtactaatgaaggcgcaggaagccctctctggatacaattcttcaccaattgggataaaactcacaaaagatgaactctctcaattggtta |
18169080 |
T |
|
| Q |
569 |
ctatgatcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaacatgacaatggaac |
668 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18169079 |
ctatgatcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaacatgaaaatggaac |
18168980 |
T |
|
| Q |
669 |
ttctttgtgttcattggaaagttcattgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataagagacatcaaaaattct |
768 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18168979 |
ttctttgtgttcattggaaagttctttgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataagagacttcaaaaattct |
18168880 |
T |
|
| Q |
769 |
agtgctatttcacttgaattgccactaatggccatgcactctaaagagaaatcattgtcgtgtccaatgtttgtg |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
18168879 |
agtgctatttcacttgaattgccactaatggccatgcactcagaagagaaatcattgtcgtgtccaatgtctgtg |
18168805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 18169666 - 18169583
Alignment:
| Q |
8 |
acaatgcagcagagaaatcattcaaggggaccataatcaaatcactgagtaataattagagc-ttttatcaaatattttattat |
90 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18169666 |
acaatgcagcagagaaatcggtcaaggggaccataatcaaatcactgagtaataattagagctttttatcaaatattttattat |
18169583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 31748617 - 31748532
Alignment:
| Q |
415 |
tgatttcaggtgcagaaacatttgcagcttcgaatcgaagctcaaggaaaatatttacaatcggtactaacgaaggcgcaggaagc |
500 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||| |||||||||||||| || |||||||| ||||||| |||||| |||||||| |
|
|
| T |
31748617 |
tgatttcaggtgcagaaacatttacagtttagaattgaagctcaaggaaagtacttacaatcagtactaatgaaggcacaggaagc |
31748532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 31748739 - 31748688
Alignment:
| Q |
197 |
caaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataa |
248 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
31748739 |
caaatggaagtacaaaagaaactttatgaacaaattgaggtaacatttataa |
31748688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 656
Target Start/End: Complemental strand, 31748452 - 31748370
Alignment:
| Q |
574 |
atcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaaca |
656 |
Q |
| |
|
||||||||||| ||||| ||||||||| | ||||| || |||||| ||||||| || |||||||||| || ||||||||||| |
|
|
| T |
31748452 |
atcaacaatgcatgtcctagttctccactttcagaactgacagaaacaagaggttttagtttaaacttcggtgagaggaaaca |
31748370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University