View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717R-Insertion-4 (Length: 690)
Name: NF2717R-Insertion-4
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717R-Insertion-4 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 274 - 690
Target Start/End: Original strand, 3894910 - 3895317
Alignment:
| Q |
274 |
tgaggacatcaaacaatttgcacgtgatacaaatgagaagacaaaagatgctgcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3894910 |
tgaggacatcaaacaatttgcacgtgatacaaatgagaagacaaaagatgctgcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgca |
3895009 |
T |
|
| Q |
374 |
gagaaggcagtgaaggcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggata |
473 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895010 |
gagaag---------gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggata |
3895100 |
T |
|
| Q |
474 |
aagccagagaaggaacaaatagggctgcagagaaggccgagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgc |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895101 |
aagccagagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgc |
3895200 |
T |
|
| Q |
574 |
tgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattat |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895201 |
tgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattat |
3895300 |
T |
|
| Q |
674 |
gcttatgatgcaaagga |
690 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3895301 |
gcttatgatgcaaagga |
3895317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 3894639 - 3894913
Alignment:
| Q |
36 |
attaaataattgccaaatagttatttttagagatattgtataaatataaactaactaaatgatggcatcaaagattcattaattttttggatatttannn |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3894639 |
attaaataattgccaaatagttatttttagagatattgtataaatataaactaactaaatgatggcatcaaagattcattaattttttggatatttattt |
3894738 |
T |
|
| Q |
136 |
nnnncagtggagaaattcagcagaatcaacaagaaaaccttcaaccaattgggcctatgaccattcttcatcaaagacaaaacgtgatgcagaaacagcc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3894739 |
ttttcagtggagaaattcagcagaatcaacaagaaaaccttcaaccaattgggcctatgaccattcttcatcaaagacaaaacgtgatgcagaaatagcc |
3894838 |
T |
|
| Q |
236 |
gacagagcaagagaaacaatgagtgaaggtgtagattctgaggacatcaaacaatttgcacgtgatacaaatgag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3894839 |
gacagagcaagagaaacaatgagtgaaggtgtagattctgaggacatcaaacaatactcacgtgatgcaaatgag |
3894913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 3895205 - 3895331
Alignment:
| Q |
512 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
611 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||| ||||| ||||||| |
|
|
| T |
3895205 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
3895304 |
T |
|
| Q |
612 |
atgatgccaaggatagaacaaaggaag |
638 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |
|
|
| T |
3895305 |
atgatgcaaaggaaagaaccaaggaag |
3895331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 3895268 - 3895331
Alignment:
| Q |
389 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
452 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||| | ||| || |||||||| |||| |
|
|
| T |
3895268 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
3895331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University