View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717R-Insertion-6 (Length: 590)
Name: NF2717R-Insertion-6
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717R-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 188 - 590
Target Start/End: Original strand, 27716962 - 27717363
Alignment:
| Q |
188 |
aaggaactcgtaggaagctgagataaccaggaacaacaccattcttagaagtcgtggccaacctcttcacactgagaaagttacgatgataggtaacagt |
287 |
Q |
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| T |
27716962 |
aaggaactcgtaggaagctgag-taactaggaacaacaccattcttagaagtcgtggccaacctcttcaaactgagaaagttacgatgataggtaacagt |
27717060 |
T |
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| Q |
288 |
gtcaagagaaaaagtaattaacgtgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggagga |
387 |
Q |
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| T |
27717061 |
gtcaagagaaaaagtaattaacgcgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggagga |
27717160 |
T |
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| Q |
388 |
tgacgtaattttctccatagtttatggttttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacgtattttacaaatga |
487 |
Q |
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| T |
27717161 |
tgacgtaattttcgccatagtttatggttttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacatattttacaaatga |
27717260 |
T |
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| Q |
488 |
tatgaagtatgaaaaacaatatcacgaattggaacaaaattcatttacagcgcattatctatatgttctctctaatgaaatacttcgctcaagggtaatc |
587 |
Q |
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| T |
27717261 |
tttgaagtatgaaaaacaatttcacgaattggaacaaaattcatttacagcgcattatctatctgttatctctaatgaaatacttcgctcaagggtaatc |
27717360 |
T |
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| Q |
588 |
ttg |
590 |
Q |
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| T |
27717361 |
ttg |
27717363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 27711088 - 27711273
Alignment:
| Q |
8 |
aagggatatccaaatgacccttgtttgaactatgtagacattttgcatgataaaacctaagatcaaatcattgttaagaaaattaacaacacatcaaatg |
107 |
Q |
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| T |
27711088 |
aagggatatccaaataacccttgtttgaactatgtagacattttgcatgataaaacctaagatcaaaacattgttaagaaaattaacaacacatcaaatg |
27711187 |
T |
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| Q |
108 |
aaagaatatgacaaagatattgtttgaattaatcgagttagtagacggttcaatttttccttagttattgaattgatcttaaggaa |
193 |
Q |
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| T |
27711188 |
aaagaatatgacaatggtattgtttgaattaatcgagttagtagacggttcaatttttccttagttattgaattgatcttaaggaa |
27711273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 28065393 - 28065337
Alignment:
| Q |
310 |
gtgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgc |
366 |
Q |
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| T |
28065393 |
gtgttaggcaaaggggtctcacacgtgatttatcaaataaataagggaggtttgtgc |
28065337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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