View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717R-Insertion-7 (Length: 546)

Name: NF2717R-Insertion-7
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717R-Insertion-7
NF2717R-Insertion-7
[»] chr4 (1 HSPs)
chr4 (37-546)||(26321317-26321826)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 37 - 546
Target Start/End: Complemental strand, 26321826 - 26321317
Alignment:
Q  37 tttgttgagggtggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaattt 136  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26321826 tttgttaatggtggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaattt 26321727  T
Q  137 gtggaaattttggatgtagaatgatttggggaagtctaatagagaatcaatcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaaga 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26321726 gtggatattttggatgtagaatgatttggggaagtctaatagagaatcaagcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaaga 26321627  T
Q  237 atgcaaatggactaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaattt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26321626 atgcaaatggactaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaattt 26321527  T
Q  337 ctgtttctctgaatgaatgtaatatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagatttt 436  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26321526 gtgtttctctgaatgaatgtactatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagatttt 26321427  T
Q  437 gaaattgggtttgtgagatcattgtaagtaatatagaccatagtaaggtaccacttggtggaattaatgctagggattgattatagttaggataaaagca 536  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26321426 gaaattgggtttgtgagatcattgtaagtaatatagaccatagtgaggtaccacttggtggaattaatgttagggattgattatagttaggataaaagca 26321327  T
Q  537 catagataca 546  Q
    ||||||||||    
T  26321326 catagataca 26321317  T

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