View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717R-Insertion-8 (Length: 465)

Name: NF2717R-Insertion-8
Description: NF2717R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717R-Insertion-8
NF2717R-Insertion-8
[»] chr1 (1 HSPs)
chr1 (9-465)||(44973726-44974183)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Original strand, 44973726 - 44974183
Alignment:
Q  9 atccacaccaacgttatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 107  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973726 atccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 44973825  T
Q  108 tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44973826 tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcatt 44973925  T
Q  208 gcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg 307  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973926 gcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg 44974025  T
Q  308 ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttcccttaactcttcacctatcac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44974026 ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttctcttaactcttcacctatcac 44974125  T
Q  408 taacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcatgtctt 465  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974126 taacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcatgtctt 44974183  T

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