View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_high_1 (Length: 915)

Name: NF2717_high_1
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_high_1
NF2717_high_1
[»] chr4 (4 HSPs)
chr4 (19-902)||(28093668-28094554)
chr4 (41-94)||(38755907-38755960)
chr4 (41-94)||(40553936-40553989)
chr4 (41-94)||(44363129-44363182)
[»] chr1 (4 HSPs)
chr1 (580-812)||(26156293-26156525)
chr1 (580-812)||(26169591-26169823)
chr1 (40-94)||(4349744-4349798)
chr1 (52-94)||(20999860-20999902)
[»] chr3 (2 HSPs)
chr3 (586-637)||(55164544-55164595)
chr3 (95-124)||(41330312-41330341)
[»] chr6 (1 HSPs)
chr6 (42-94)||(6808478-6808530)
[»] chr5 (1 HSPs)
chr5 (42-93)||(32354211-32354262)
[»] chr2 (1 HSPs)
chr2 (41-94)||(14530403-14530456)


Alignment Details
Target: chr4 (Bit Score: 817; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 19 - 902
Target Start/End: Original strand, 28093668 - 28094554
Alignment:
Q  19 atgttcgacacacatatgtgagtaaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaaggggattacattcaattaattcattttt 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  28093668 atgttcaacacacatatgtgagtaaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcttggaagaggattacattcaattaattcattttt 28093767  T
Q  119 ccaaatgctatgggtgccgaagtgtcttggtcaatgtcgcgttcagtattcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtc 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093768 ccaaatgctatgggtgccgaagtgtcttggtcaatgtcacgttcagtattcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtc 28093867  T
Q  219 tatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataaactt---aaatgtggtat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    | || |  | |    
T  28093868 tatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataatctatcaacattttattt 28093967  T
Q  316 tgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093968 tgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtg 28094067  T
Q  416 gctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28094068 gctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatat 28094167  T
Q  516 gacaccacatcgcaaactgttgcttatatatacacaaacaatcaaacacaatacataataattgattcatgctttaccctcaacccttgcatgggtgagt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28094168 gacaccacatcgcaaactgttgcttatatatacacaaacaatcaaacacaatacataataattgattcatgctttaccctcaacccttgcatgggtgagt 28094267  T
Q  616 ccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28094268 ccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatc 28094367  T
Q  716 ttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttct 815  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28094368 ttgcatatctatgaatgcgttctgtcacaggtttcacgcataaaacagggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttct 28094467  T
Q  816 agacacaacatgttcctgctggctcaaatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtccct 902  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28094468 agacacaacatgttcctgttggctcaaatacttcatattactctcaaactttgttaatggcaaatctgtgttaatccaattgtccct 28094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 38755907 - 38755960
Alignment:
Q  41 taaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    ||||| |||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  38755907 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagggg 38755960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 40553936 - 40553989
Alignment:
Q  41 taaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    ||||| |||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  40553936 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagggg 40553989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 44363129 - 44363182
Alignment:
Q  41 taaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    ||||| |||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagggg 44363182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 580 - 812
Target Start/End: Complemental strand, 26156525 - 26156293
Alignment:
Q  580 attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac 679  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||    || |||||||| || ||||| | ||| | | ||||      
T  26156525 attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg 26156426  T
Q  680 cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg 779  Q
    || | || |||| ||||||||||  ||| ||||  || ||||||| ||||||||||   || |||||||||||||| |||||||||||||| |  || ||    
T  26156425 catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg 26156326  T
Q  780 cgtaacagtattctcaactctataaaagtattt 812  Q
     ||||| |||||||| || |||||||| |||||    
T  26156325 agtaaccgtattctccaccctataaaaatattt 26156293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 580 - 812
Target Start/End: Complemental strand, 26169823 - 26169591
Alignment:
Q  580 attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac 679  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||    || |||||||| || ||||| | ||| | | ||||      
T  26169823 attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg 26169724  T
Q  680 cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg 779  Q
    || | || |||| ||||||||||  ||| ||||  || ||||||| ||||||||||   || |||||||||||||| |||||||||||||| |  || ||    
T  26169723 catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg 26169624  T
Q  780 cgtaacagtattctcaactctataaaagtattt 812  Q
     ||||| |||||||| || |||||||| |||||    
T  26169623 agtaaccgtattctccaccctataaaaatattt 26169591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 4349798 - 4349744
Alignment:
Q  40 gtaaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    |||||| |||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  4349798 gtaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagggg 4349744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 20999860 - 20999902
Alignment:
Q  52 ccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    |||||||| |||||||||||||||| |||||| ||||||||||    
T  20999860 ccggtgcactaaagctcccgcgtacgcagggtgccggaagggg 20999902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 586 - 637
Target Start/End: Original strand, 55164544 - 55164595
Alignment:
Q  586 gctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaat 637  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  55164544 gcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat 55164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 41330341 - 41330312
Alignment:
Q  95 attacattcaattaattcatttttccaaat 124  Q
    ||||||||||||||||||||||||||||||    
T  41330341 attacattcaattaattcatttttccaaat 41330312  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 6808530 - 6808478
Alignment:
Q  42 aaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    |||| |||| |||||||| |||||||||||| |||||||||||| ||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaagggg 6808478  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 32354262 - 32354211
Alignment:
Q  42 aaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaaggg 93  Q
    |||| |||| |||||||| |||||||||||| |||||||||||| |||||||    
T  32354262 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggg 32354211  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 14530456 - 14530403
Alignment:
Q  41 taaagagcaaaccggtgcagtaaagctcccgcgtacacagggtcccggaagggg 94  Q
    ||||| |||| |||||||| |||||||||||| ||| |||||||| ||||||||    
T  14530456 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagggg 14530403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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