View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_11 (Length: 561)
Name: NF2717_high_11
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 51739516 - 51740061
Alignment:
| Q |
1 |
tacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaatttttggtctatctgtctcattttatttatatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739516 |
tacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaatttttggtctatctgtctcattttatttatatcaag |
51739615 |
T |
|
| Q |
101 |
aattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacacaagttcccctatggtcatccgtttggcagcagattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739616 |
aattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacacaagttcccctatggtcatccgtttggcagcagattt |
51739715 |
T |
|
| Q |
201 |
aaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaag |
300 |
Q |
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| T |
51739716 |
aaggtttgccgcatctgatgtcggtcgaatcgctgtgtccgccgcattgattgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaag |
51739815 |
T |
|
| Q |
301 |
atggatgataagaagtataatgcagcacaagcttcaaagggtttaagttgtctcattcttacaagttttgtggttcttatgaatagatacttagccattt |
400 |
Q |
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| T |
51739816 |
atggatgataagaagtataatgcggcacaagcttcaaagggtttaagttgtctcattcttacaagttttgtggttcttatgaatagatacttagccattt |
51739915 |
T |
|
| Q |
401 |
ggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactattattcatcctctttattcttttaactacctcgatgattatagaaatatg |
500 |
Q |
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| T |
51739916 |
ggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactattattcatcctctttattcttttaactacctcaatgattatagaaatatg |
51740015 |
T |
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| Q |
501 |
gaattacaatagtattattcattgnnnnnnnattggattgctattt |
546 |
Q |
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| T |
51740016 |
gaattacaatagtattattcattgtttttttattggattgctattt |
51740061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 10200578 - 10200643
Alignment:
| Q |
388 |
tacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactatta |
453 |
Q |
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| T |
10200578 |
tacttagccgtttggttaaactcaagaaatagaaaccaaaaatacctaaaagctactgaactatta |
10200643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 10200362 - 10200481
Alignment:
| Q |
154 |
gtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattg |
253 |
Q |
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|||||||||||||| ||||| ||||| || |||||| | || || ||| | ||||| ||||| ||| |||| |||||||| |||||| | || |||||| |
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| T |
10200362 |
gtatcatacacaagctcccccatggtgattcgtttgacggcggagttacgatttgctgcatccgatatcgggcgaatcgcggtgtcttcagcgttgatta |
10200461 |
T |
|
| Q |
254 |
tagaaatgggttgcttattg |
273 |
Q |
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|||||||| |||||||||| |
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| T |
10200462 |
cagaaatggcttgcttattg |
10200481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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