View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_13 (Length: 534)
Name: NF2717_high_13
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 97 - 518
Target Start/End: Original strand, 7956934 - 7957355
Alignment:
| Q |
97 |
tccttatcaactgggtcagtttcattaacactgtaagttttggtgacggtctagctataataactcataataatggtatcgtatttactagagcaacaaa |
196 |
Q |
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| T |
7956934 |
tccttatcaactgggtcagtttcgttatcactgtaagttttggtgacggtctagctataataactcataataatggtatcgtatttactagagcaacaaa |
7957033 |
T |
|
| Q |
197 |
aatggaaaagaaaaataaagaagtatatgaatactagttcataccatatataccatacatgaaatcgacgaaacactagcatatgcaacgtttctgaagg |
296 |
Q |
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| T |
7957034 |
aatggaaaagaaaaataaagcagtatatgaatactagttcataccatatataccatacatgaaatcgacgaaacactagcatatgcaacgtttctgaagg |
7957133 |
T |
|
| Q |
297 |
ggaaacataaatttggatttgttataagtcatgtatgagtcaatttttgtggtccaagaaactaaaaaacaagatcctcaatcacatatataaacaaata |
396 |
Q |
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| T |
7957134 |
ggaaacataaatttggatttgttataagtcatgtatgagtcaatttttgtggtccaagaaactaaaaaacaagatcctcaatcacatatataaacaaata |
7957233 |
T |
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| Q |
397 |
aaattcatgtatatggttcacattcacaaatataaataatatagctgccagtggtccatgattgttcttactattccctctgactaagctggttttgcac |
496 |
Q |
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| T |
7957234 |
aaattcatgtatatggttcacagtcacatatataaataatatagctgccagtggtccatgatagttcttactattccctctgactaagctggttttgcac |
7957333 |
T |
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| Q |
497 |
gttcaagcctagccattcattc |
518 |
Q |
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| T |
7957334 |
gttcaagcctagccattcattc |
7957355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7956782 - 7956883
Alignment:
| Q |
1 |
atgagttgaatttaaatgaagttcatcaaggtcatgacaggttttaaggtttaaagaaagttggtagaggtaattacatattattcatcagtaatgtcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
7956782 |
atgagttgaatttaaatgaagttcatcaaggtcatgacaggttttaaggtttaaagaaagttggtagaggtaattacatattatccatcagtaatgttct |
7956881 |
T |
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| Q |
101 |
ta |
102 |
Q |
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|| |
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| T |
7956882 |
ta |
7956883 |
T |
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