View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_14 (Length: 497)
Name: NF2717_high_14
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Original strand, 44973726 - 44974189
Alignment:
| Q |
20 |
atccacaccaacgttatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc |
118 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44973726 |
atccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc |
44973825 |
T |
|
| Q |
119 |
tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44973826 |
tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcatt |
44973925 |
T |
|
| Q |
219 |
gcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44973926 |
gcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg |
44974025 |
T |
|
| Q |
319 |
ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttcccttaactcttcacctatcac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44974026 |
ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttctcttaactcttcacctatcac |
44974125 |
T |
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| Q |
419 |
taacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg |
482 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974126 |
taacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg |
44974189 |
T |
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