View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_16 (Length: 482)
Name: NF2717_high_16
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 8358157 - 8358588
Alignment:
| Q |
18 |
acaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacataga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358157 |
acaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacataga |
8358256 |
T |
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| Q |
118 |
aaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagctttttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
8358257 |
aaaatggttgctcaagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtcaagatttttgg |
8358356 |
T |
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| Q |
218 |
atgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaaca |
317 |
Q |
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| T |
8358357 |
atgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaaca |
8358456 |
T |
|
| Q |
318 |
tta-----attatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacgagtaatattatagaggaaataaat |
412 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8358457 |
ttaattatattatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacaagtaatattatagaggaaataaat |
8358556 |
T |
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| Q |
413 |
aattcacgggcgtgattttcacacgttgcttg |
444 |
Q |
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| T |
8358557 |
aattcacggacgtgattttcacacgttgcttg |
8358588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 28593416 - 28593124
Alignment:
| Q |
18 |
acaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacataga |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
28593416 |
acaacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaagtggagcatagg |
28593317 |
T |
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| Q |
118 |
aaaatggttgctcaagtttgtgtgaagaat---gttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagctttt |
214 |
Q |
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||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||| |
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| T |
28593316 |
aaaatttttgctgatgtttgtgtgaagaataatgttggtagtaaatgtgaaatattgaagagggttatgagtgaatatcgagatcaagagtctagctttt |
28593217 |
T |
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| Q |
215 |
tggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagaga |
307 |
Q |
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| T |
28593216 |
tggatcagttggaagagcttgaagaacatgtttacttgtgctttcttaccatcaataaatctaggagacttgttatgcaacaaattacagaga |
28593124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 53447728 - 53447805
Alignment:
| Q |
18 |
acaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggtt |
95 |
Q |
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|||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
53447728 |
acaaattgatgttgctgcaaaaggggtttatatagtgataaatgatttggatactatgagccgtatggttaagaggtt |
53447805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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