View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_17 (Length: 463)
Name: NF2717_high_17
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 5374322 - 5374757
Alignment:
| Q |
18 |
attctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgtta |
117 |
Q |
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| T |
5374322 |
attctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgtta |
5374421 |
T |
|
| Q |
118 |
tacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtca |
217 |
Q |
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| T |
5374422 |
tacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtca |
5374521 |
T |
|
| Q |
218 |
agtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaaggtgtatgt |
317 |
Q |
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| T |
5374522 |
agtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaaggtgtatgt |
5374621 |
T |
|
| Q |
318 |
gaaactggtaacaacatgaattcgtcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtccaatagatg |
417 |
Q |
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| T |
5374622 |
gaaactggtaacaacatgaattcatcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtccaatagatg |
5374721 |
T |
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| Q |
418 |
aaacaacagaatcaaaatcagctagagatgatgatg |
453 |
Q |
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| T |
5374722 |
aaacaacagaatcaaaatcagctagagatgatgatg |
5374757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 47368240 - 47367987
Alignment:
| Q |
30 |
tacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacctgaactca |
129 |
Q |
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|||||||| |||||||||| | ||||||||| ||||||| |||||||| || ||| |||| || || ||||||||| ||||| ||||| ||| |
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| T |
47368240 |
tacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtca |
47368141 |
T |
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| Q |
130 |
gataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattgg |
229 |
Q |
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| T |
47368140 |
gatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttaccgtcctctggaaaacaaagtgaggtgattgttgg |
47368041 |
T |
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| Q |
230 |
tattcttgacactggtatatggccagagctaaaaagcttagatgacacaggact |
283 |
Q |
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| T |
47368040 |
agtaattgacacaggtgtatggcctgaactaaaaagcttcgatgacactggact |
47367987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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