View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_high_18 (Length: 461)

Name: NF2717_high_18
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_high_18
NF2717_high_18
[»] chr2 (2 HSPs)
chr2 (12-448)||(15889977-15890413)
chr2 (37-73)||(30563426-30563462)
[»] chr4 (3 HSPs)
chr4 (37-71)||(5654599-5654633)
chr4 (36-72)||(3458172-3458208)
chr4 (37-65)||(26276023-26276051)
[»] chr1 (2 HSPs)
chr1 (37-71)||(40747781-40747815)
chr1 (37-73)||(6427367-6427403)
[»] chr8 (1 HSPs)
chr8 (37-66)||(34201059-34201088)
[»] chr7 (1 HSPs)
chr7 (40-77)||(19930943-19930980)
[»] chr5 (1 HSPs)
chr5 (40-73)||(38749569-38749602)
[»] scaffold0147 (1 HSPs)
scaffold0147 (36-72)||(37670-37706)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 448
Target Start/End: Original strand, 15889977 - 15890413
Alignment:
Q  12 acataccctatgaaactcaaacacggagaaaatgacataattcaatgtaattatacgtgttgatatacaaacgatacatatccggcactaagacacgctt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  15889977 acataccctatgaaactcaaacatggagaaaatgacataattcaatggaattatacgtgttggtatccaaacgatacatatccggcactaagacacgctt 15890076  T
Q  112 aatttgaggagtattcagacnnnnnnncaaggaacatggatgaagagaagtggtaccttaaagagacaaaaatgtgtggacaataatctatgagatggat 211  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15890077 aatttgaggagtattcagacaaaaaaacaaggaacatggatgaagagaagtggtaccttaaagagacaaaaatgtgtggacaataatctatgagatggat 15890176  T
Q  212 aaagcatcgtaactattgttgttcttgttttgaggcattgagttgttggagttgaaagtgcaccacccaacatttgagtgtgagtaatataaacagttcc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15890177 aaagcatcgtaactattgttgttcttgttttgaggcattgagttgttggagttgaaagtgcaccacccaacatttgagtgtgagtaatatgaacagttcc 15890276  T
Q  312 agaaagctaccataagaataataatgagctacaattgtgaaactgataatttagtttttggaagaagttttgtgccaaagatgatgatagaaagtatttt 411  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15890277 agaaagctaccataagaataataatgagctataattgtgaaactgataatttagtttttggaagaagttttgtgccaaagatgatgatagaaagtatttt 15890376  T
Q  412 ctttcttgattggctgacattgattttgtatgatgat 448  Q
    |||||||||||||||||||||||||||||||||||||    
T  15890377 ctttcttgattggctgacattgattttgtatgatgat 15890413  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 30563426 - 30563462
Alignment:
Q  37 gagaaaatgacataattcaatgtaattatacgtgttg 73  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  30563426 gagaaaatgacataattcaatgtaactataggtgttg 30563462  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 5654633 - 5654599
Alignment:
Q  37 gagaaaatgacataattcaatgtaattatacgtgt 71  Q
    |||||||||||||||||||||||||| ||||||||    
T  5654633 gagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 3458208 - 3458172
Alignment:
Q  36 ggagaaaatgacataattcaatgtaattatacgtgtt 72  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  3458208 ggagaaaatgaaataattgaatgtaattatacgtgtt 3458172  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 26276051 - 26276023
Alignment:
Q  37 gagaaaatgacataattcaatgtaattat 65  Q
    |||||||||||||||||||||||||||||    
T  26276051 gagaaaatgacataattcaatgtaattat 26276023  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 40747815 - 40747781
Alignment:
Q  37 gagaaaatgacataattcaatgtaattatacgtgt 71  Q
    |||||||||||||||||||||||||||||| ||||    
T  40747815 gagaaaatgacataattcaatgtaattataggtgt 40747781  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 6427367 - 6427403
Alignment:
Q  37 gagaaaatgacataattcaatgtaattatacgtgttg 73  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  6427367 gagaaaatcacataattcaatgtaattatatgtgttg 6427403  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 34201088 - 34201059
Alignment:
Q  37 gagaaaatgacataattcaatgtaattata 66  Q
    ||||||||||||||||||||||||||||||    
T  34201088 gagaaaatgacataattcaatgtaattata 34201059  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 19930980 - 19930943
Alignment:
Q  40 aaaatgacataattcaatgtaattatacgtgttgatat 77  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatat 19930943  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 38749602 - 38749569
Alignment:
Q  40 aaaatgacataattcaatgtaattatacgtgttg 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  38749602 aaaatgacataattcaatgtaattatatgtgttg 38749569  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 37706 - 37670
Alignment:
Q  36 ggagaaaatgacataattcaatgtaattatacgtgtt 72  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  37706 ggagaaaatgaaataattgaatgtaattatacgtgtt 37670  T

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