View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_high_20 (Length: 460)
Name: NF2717_high_20
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 123 - 442
Target Start/End: Complemental strand, 28532566 - 28532249
Alignment:
| Q |
123 |
ggtcatgttgtcgatattacttatttatgcgtatagaataaagtacgaatttaatttttcagcaacttatagccaaggagaagaggaatttaagctaatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28532566 |
ggtcatgttgtcgatattacttatttatgcgtatagaataaagtacgaatttaatttttcagcaacttatagccaaggagaagaggaatttaagctaatt |
28532467 |
T |
|
| Q |
223 |
agaaggaaaaagctgaagtgatctgaaaaagcaaattatagagagagcttcatgtacactctattctctttcaaactgtattaaaggtatacatctataa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28532466 |
agaaggaaaaagctgaagtgatctgaaaaagcaaattatagagag--cttcatgtacactctattctctttcaaactgtattaaaggtatacatcaataa |
28532369 |
T |
|
| Q |
323 |
gtatatatactactaaagatttatcctacttataggctacgaatcttacacatggtattgttagattttcagtaaacaaatcaagtacaaaatatttttc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28532368 |
gtatatatactactaaagatttatcctacttataggctacgaatcttacacatggtattgttagattttcagtaaacaaatcaagtacaaaatatttttc |
28532269 |
T |
|
| Q |
423 |
tctcaactcagttttataca |
442 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28532268 |
tctcaactcagttttataca |
28532249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 28532677 - 28532637
Alignment:
| Q |
12 |
atgaaattaagtgtatcaataaatatgctaattttttcaac |
52 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28532677 |
atgaaattaagtgtatctgtaaatatgctaattttttcaac |
28532637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University