View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_high_22 (Length: 415)

Name: NF2717_high_22
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_high_22
NF2717_high_22
[»] chr8 (10 HSPs)
chr8 (1-399)||(4505925-4506323)
chr8 (211-397)||(15077081-15077267)
chr8 (229-397)||(15164894-15165062)
chr8 (214-382)||(15751572-15751740)
chr8 (207-315)||(13033891-13033999)
chr8 (213-301)||(15000653-15000741)
chr8 (207-307)||(15030197-15030297)
chr8 (207-307)||(15053025-15053125)
chr8 (82-131)||(15077319-15077368)
chr8 (82-131)||(15164775-15164824)
[»] chr7 (3 HSPs)
chr7 (207-316)||(1617755-1617864)
chr7 (207-395)||(1626305-1626493)
chr7 (207-262)||(1631266-1631321)
[»] chr3 (1 HSPs)
chr3 (207-321)||(3652462-3652576)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 4505925 - 4506323
Alignment:
Q  1 aaagaaaacattaatcaacctttgaaacatacactcacataacaattgagacaacatcatatggtgtactaaacatgtagcacctctttattcagcacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  4505925 aaagaaaacattaatcaacctttgaaacatacactcacataacaattgagacaaccacatatggtgtactaaacatgtagtacctctttattcagcacaa 4506024  T
Q  101 gaaaagaaaaaacatttgtgccatgcatgtttcttacatgtagtaataaaacatccactgaccatttgacaatagtgtgaaaggatcactttatgttgtt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4506025 gagaagaaaaaacatttgtgccatgcatgtttcttacatgtagtaataaaacatccactgaccatttgacaatagtgtgaaaggatcgctttatgttgtt 4506124  T
Q  201 gataggtccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4506125 gataggtccacttaacttttcttctatgattttggatagtttttcttccattcaaggagaaagataatttatccaatctcctacttctgcctttctaaag 4506224  T
Q  301 aagaacttgttctcaaagttcagtccaacagatccagatttatttacctccaattccttcatcttttcagagccacataaatctattatgttttctatc 399  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4506225 aagaacttgttctcaaagtttagtccaacagatccagatttatttacctccaattccttcatcttttcaaagccacataaatctattatgttttctatc 4506323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 211 - 397
Target Start/End: Complemental strand, 15077267 - 15077081
Alignment:
Q  211 cttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgt 310  Q
    ||||||||||| || |  |||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||| ||||||||| ||||    
T  15077267 cttaacttttcatccacaattttggacagtttttcttccattgaaggggaaaggtaatttttccaatcttctactttggcctttcgaaagaagaatttgt 15077168  T
Q  311 tctcaaagttcagtcc-aacagatccagatttatttacctccaattccttcatcttttcagagccacataaatctattatgttttcta 397  Q
    |||||| | || | || |||||||||| |||||||||||||||||||||||||| ||||| | | ||||||||  |||||||||||||    
T  15077167 tctcaatg-tctgaccgaacagatccaaatttatttacctccaattccttcatcgtttcaaaacaacataaattgattatgttttcta 15077081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 397
Target Start/End: Original strand, 15164894 - 15165062
Alignment:
Q  229 attttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaa-agttcagtcca 327  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||  ||||||| ||||||||| |||||| ||| |  | |   ||    
T  15164894 attttggatagtttttcttccattgaaggggaaaggtaatttttccaatctcctactttggcctttcgaaagaagaatttgttcccaacatatgaccgca 15164993  T
Q  328 acagatccagatttatttacctccaattccttcatcttttcagagccacataaatctattatgttttcta 397  Q
      | |||||||||||||||||||||||||||||||| ||||| | | ||||||||  |||||||||||||    
T  15164994 tga-atccagatttatttacctccaattccttcatcgtttcaaaacaacataaattgattatgttttcta 15165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 382
Target Start/End: Complemental strand, 15751740 - 15751572
Alignment:
Q  214 aacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttct 313  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||| || || |||||||||||||| || |||||||  || ||| | || || |    
T  15751740 aacttctcttcaatgattttggatagtttttctaccattgaaggagaaaggtagttaatccaatctcctacctcagcctttcggaacaagtagttttttt 15751641  T
Q  314 caaagttcagtccaacagatccagatttatttacctccaattccttcatcttttcagagccacataaat 382  Q
    |||  |||  |||||    |||| |||||||| ||||||||||||||||||||| | ||| ||||||||    
T  15751640 caattttccttccaaactctccaaatttatttgcctccaattccttcatctttttaaagctacataaat 15751572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 315
Target Start/End: Complemental strand, 13033999 - 13033891
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    ||||||||| ||||||||||||| |||||||| | |||||  ||||||||||||||  ||||||| ||||||||||| |||| |||||| |||||| |||    
T  13033999 tccacttaatttttcttctatgactttggataatctttctatcattgaaggagaaaagtaatttacccaatctcctatttctccctttcgaaagaaaaac 13033900  T
Q  307 ttgttctca 315  Q
    || ||||||    
T  13033899 tttttctca 13033891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 15000741 - 15000653
Alignment:
Q  213 taacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaaga 301  Q
    |||| |||||| | |||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |||||    
T  15000741 taacatttcttttgtgattttggatattttttctaccattgaacgggaaagataatttttccaatctcctatttcggcctttcgaaaga 15000653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 15030297 - 15030197
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    ||||||||| ||||||| ||||| |||||||| |||||||  ||||||||| || |||||||| | |||||| || |  ||| ||||||||||||| |||    
T  15030297 tccacttaatttttcttttatgactttggataatttttctatcattgaaggggagagataattcacccaatcccccatctctccctttctaaagaaaaac 15030198  T
Q  307 t 307  Q
    |    
T  15030197 t 15030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 15053125 - 15053025
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    |||||| || |||||||  ||||||||||||| | |||||  ||||||||||||||  ||||||| |||||| |||| |||| |||||| |||||| |||    
T  15053125 tccactgaatttttcttgcatgattttggataatctttctatcattgaaggagaaaagtaatttacccaatcccctatttctccctttcgaaagaaaaac 15053026  T
Q  307 t 307  Q
    |    
T  15053025 t 15053025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 15077368 - 15077319
Alignment:
Q  82 acctctttattcagcacaagaaaagaaaaaacatttgtgccatgcatgtt 131  Q
    |||||||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  15077368 acctctttattctgcaaaagaaaataaacaacatttgtgccatgcatgtt 15077319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 15164775 - 15164824
Alignment:
Q  82 acctctttattcagcacaagaaaagaaaaaacatttgtgccatgcatgtt 131  Q
    |||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  15164775 acctctttattctgcaaaagaaaagaaccaacatttgtgccatgcatgtt 15164824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 1617755 - 1617864
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    ||||||||| |||||||||||||||||||| || || ||| |||||||||||||||||||||| |||||||| |||| ||||||||||| |||| || ||    
T  1617755 tccacttaatttttcttctatgattttggacagcttctctaccattgaaggagaaagataattaatccaatcccctatttctgcctttcgaaagtagtac 1617854  T
Q  307 ttgttctcaa 316  Q
    || |||||||    
T  1617855 tttttctcaa 1617864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 395
Target Start/End: Original strand, 1626305 - 1626493
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    ||||||||| ||||||||||||||||||||||  || ||| |||||||||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||    
T  1626305 tccacttaatttttcttctatgattttggataacttatctaccattgaaggagaaagataattaatccaatcccctatttctccctttcgaaagaagtac 1626404  T
Q  307 ttgttctcaaagttcagtccaacaga-tccagatttatttacctccaattccttcatcttttcagagccacataaatctattatgttttc 395  Q
    || || ||| |  ||  ||| | ||| ||||||||||||| | |||||| | |||||||||||| ||| ||||||||  ||||| |||||    
T  1626405 tttttgtcataaatctttccca-agactccagatttatttgcttccaatcctttcatcttttcaaagctacataaattgattatattttc 1626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 1631266 - 1631321
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaa 262  Q
    ||||||||| ||||||||||||||||||||||  |||||| ||||||||| |||||    
T  1631266 tccacttaatttttcttctatgattttggataacttttctaccattgaagaagaaa 1631321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 321
Target Start/End: Original strand, 3652462 - 3652576
Alignment:
Q  207 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 306  Q
    ||||| |||||| ||||| ||||  ||||| | ||||||  |||||||||| |||||||||||  ||||||| || |||||  | |||||||| ||||||    
T  3652462 tccacctaacttctcttcaatgaccttggacaatttttcaaccattgaaggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaac 3652561  T
Q  307 ttgttctcaaagttc 321  Q
    || ||||||||||||    
T  3652562 ttattctcaaagttc 3652576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University