View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_24 (Length: 402)
Name: NF2717_high_24
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 11928728 - 11929102
Alignment:
| Q |
10 |
aatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaag |
109 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
11928728 |
aatatgttgacattatcaacttttcaattattgtcaaatcttagtcttaatcttcaagagcttcatctttctcaaaacaatattgttttgtcatctcatg |
11928827 |
T |
|
| Q |
110 |
tctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgca |
209 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
11928828 |
tgtatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctaacctttagcaccaaattgca |
11928927 |
T |
|
| Q |
210 |
agagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttccactttcaaatctttatcttcccttctcatcctcgatctc |
309 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
11928928 |
agagctttatctaacaagttgcagtcttacaaataaaagttttcttgtgtcatctacttccactttcaaatttttatcttcccttctcatccttgatctc |
11929027 |
T |
|
| Q |
310 |
tccttaaatttgttgagatcatcagaagtgtttttctggatttttaactttactatcaatcttcatagccttgag |
384 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
11929028 |
tcctcaaatttgttgagatcatcagaagtgtttttctggatttttaactttactaccgatcttcatagccttgag |
11929102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 11963018 - 11963391
Alignment:
| Q |
10 |
aatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaag |
109 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
11963018 |
aatatgttgacatcatcagcttttcaattcttgtcaaatattagtcttaatcttcaagagcttgatctttctgaaaacaatgttgttttgtcatctcatt |
11963117 |
T |
|
| Q |
110 |
tctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgca |
209 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| |||| || || |||||| | |||||||| |
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| T |
11963118 |
tctatccaaactttccttctcttgtcatccttgacctctcatataataatatttcatcatcccaatttccaggtatccgcagttttagctcgaaattgca |
11963217 |
T |
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| Q |
210 |
agagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttccactttcaaatctttatcttcccttctcatcctcgatctc |
309 |
Q |
| |
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| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| | | || |||| |||||||||||||||||||||||| |
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| T |
11963218 |
aaagctttatctaacaagttgcatgcttacagataaaagttttcttgtgtcatccacttcagttgtgaactcttcatcttcccttctcatcctcgatctt |
11963317 |
T |
|
| Q |
310 |
tccttaaatttgttgagatcatcagaagtgtttttctggatttttaactttactatcaatcttcatagccttga |
383 |
Q |
| |
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|||| |||| ||||||||||||||||||| ||||| ||| |||||||||||| | | |||||||||||||| |
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| T |
11963318 |
tcctcaaatatgttgagatcatcagaagtatttttatgggcttttaactttaccactaggcttcatagccttga |
11963391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 11852527 - 11852160
Alignment:
| Q |
10 |
aatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaag |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
11852527 |
aatatgttgacatcatcagcttttcaattcttgtcaaatattagtcttaatcttcaagagcttcatctttctggaaacaatgttgttttgtcatctcatt |
11852428 |
T |
|
| Q |
110 |
tctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgca |
209 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| | |||||| | |||||| ||||||| |||| || || |||||| |||||||||| |
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| T |
11852427 |
tctatccaaactttccttctcttgtcatccttgacctctcaaataataatatttcatcatcccaatttccaggtatccgcagttttagctccaaattgca |
11852328 |
T |
|
| Q |
210 |
agagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttccactttcaaatctttatcttcccttctcatcctcgatctc |
309 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | | || |||| |||||||||||||||||| ||| | |
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| T |
11852327 |
agagcttcatctaacaaattgcatgcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtt |
11852228 |
T |
|
| Q |
310 |
tccttaaatttgttgagatcatcagaagtgtttttctggatttttaactttactatcaatcttcatag |
377 |
Q |
| |
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|||| |||| ||||||||||||| ||| | ||||| ||| |||||||||||| | ||||||||||| |
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| T |
11852227 |
tcctcaaatatgttgagatcatcggaaatatttttatgggcttttaactttaccactaatcttcatag |
11852160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 11833263 - 11832896
Alignment:
| Q |
10 |
aatatgttgacatcatcaacttttcaattattgtcaaatcttagtcttgatcttcaagagcttaatctttctcaaaacaatattgttttgtcatctcaag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||| | ||||||| |
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| T |
11833263 |
aatatgttgacatcatcaacttttcaattcttgtcaaatattagtcttaatcttcaagagcttcgtctttctggaaacaatgttgtttggccatctcatt |
11833164 |
T |
|
| Q |
110 |
tctatccaaacattccttctcttgtcatccttgacctctcacacaataatctaacatcattccaatttattggtaacctcaactttagcaccaaattgca |
209 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||| ||||||| |||| || || |||||| |||||||||| |
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| T |
11833163 |
tctatccaaactttccttctcttgtcatccttgacctctcaactaataatatttcatcatcccaatttccaggtatccgcagttttagctccaaattgca |
11833064 |
T |
|
| Q |
210 |
agagctttatctaacaaattgcagtcttacagataaaagttttcttgtgtcatctacttccactttcaaatctttatcttcccttctcatcctcgatctc |
309 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | | || |||| |||||||||||||||||| ||| | |
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| T |
11833063 |
agagctttatctagaaaattgcatgcttacagataaaagttttcttgtgtcatctacttcagttgtgaactcttcatcttcccttctcatccttgatgtt |
11832964 |
T |
|
| Q |
310 |
tccttaaatttgttgagatcatcagaagtgtttttctggatttttaactttactatcaatcttcatag |
377 |
Q |
| |
|
|||| |||| ||||||||||||| ||| | ||||| ||| |||||||||||| | ||||||||||| |
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|
| T |
11832963 |
tcctcaaatatgttgagatcatcggaaatatttttatgggcttttaactttaccactaatcttcatag |
11832896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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