View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_high_25 (Length: 398)

Name: NF2717_high_25
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_high_25
NF2717_high_25
[»] chr1 (4 HSPs)
chr1 (16-185)||(12215748-12215917)
chr1 (99-184)||(12215194-12215279)
chr1 (184-244)||(33642856-33642916)
chr1 (186-244)||(49234042-49234099)
[»] chr3 (5 HSPs)
chr3 (16-184)||(1636308-1636476)
chr3 (189-381)||(11766127-11766313)
chr3 (99-185)||(1636947-1637033)
chr3 (90-184)||(41827287-41827380)
chr3 (202-244)||(25623425-25623467)
[»] chr6 (3 HSPs)
chr6 (16-183)||(28007822-28007990)
chr6 (99-184)||(28008460-28008545)
chr6 (184-243)||(11441135-11441194)
[»] scaffold0066 (1 HSPs)
scaffold0066 (184-243)||(41876-41935)
[»] chr7 (1 HSPs)
chr7 (187-236)||(24551395-24551444)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 12215748 - 12215917
Alignment:
Q  16 acacagcggcgatagaatgtaacccgtcaaaagttgctgatacgaactgctttggtgttaatgagaacatgttctctgcacctttgattaattgttttgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12215748 acacagcggcgatagaatgtaacccgtcaaaagttgctgatacgaactgctttggtgttaatgagaacatgttctctgcacctttgattaatttttttgc 12215847  T
Q  116 cacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactca 185  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12215848 cacgtgtcgctcatccgtcaaaagaacaggaaaagtggagcaagttggaactggagcagatctgaactca 12215917  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 12215279 - 12215194
Alignment:
Q  99 ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactc 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  12215279 ttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagttagaactggagcaaatctgaactc 12215194  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 33642856 - 33642916
Alignment:
Q  184 caaacaaattgccttcgtaaaaaataaaatctagctccaccactcttggcggcccacccta 244  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33642856 caaacaaactgtcttcctaaaaaataaaatctagctccaccactcttggcggcccacccta 33642916  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 49234099 - 49234042
Alignment:
Q  186 aacaaattgccttcgtaaaaaataaaatctagctccaccactcttggcggcccacccta 244  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||| ||||||||||    
T  49234099 aacaaattgccttca-aaaaaataaaatctagctccaccactattggcagcccacccta 49234042  T

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Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 1636476 - 1636308
Alignment:
Q  16 acacagcggcgatagaatgtaacccgtcaaaagttgctgatacgaactgctttggtgttaatgagaacatgttctctgcacctttgattaattgttttgc 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1636476 acacagcgacgatagaatgtaacccgtcaaaagttgctgatacgaactactttggtgttaatgagaacatgttctctgcacctttgattaattgttttgc 1636377  T
Q  116 cacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactc 184  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1636376 cacgtgtcgctcatccgtcaaaagaacaggaaaactggagtaagttggaactggagcagatctgaactc 1636308  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 189 - 381
Target Start/End: Original strand, 11766127 - 11766313
Alignment:
Q  189 aaattgccttcgtaaaaaataaaatctagctccaccactcttggcggcccaccctaatannnnnnnctcgctccaccactgtcgatagtatctaacaaat 288  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||       |||||||| |||||||| ||||||||||||||||    
T  11766127 aaattgccttcctcaaaaataaaatctagctccaccactcttggcagcccaccctaatatttttttctcgctccgccactgtccatagtatctaacaaat 11766226  T
Q  289 cagtgtaacccttgtctacatcaaccaacttttttcccggtgatcccttgatacaccctttcatttgtacggtaatatatctagtgtagttat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  11766227 cagtgtaacccttgtctacatcaaccaacttttttcccggtgatcccttgatacaccc------ttgtacggtaatatatctagtgtagttat 11766313  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 1636947 - 1637033
Alignment:
Q  99 ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactca 185  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  1636947 ttgattaattgttttgccacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagtttgaactagagcagatctgaactca 1637033  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 41827380 - 41827287
Alignment:
Q  90 tctgcacctttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactc 184  Q
    |||| ||| ||||| |||||||| | ||||||||||||||  |||||| |||||||||||||   ||||||||||| ||||||||||||||||||    
T  41827380 tctgaaccgttgatgaattgtttcgacacgtgtcgctcatctgtcaaa-gaacaggaaaactaaggcaagttggaaatggagcagatctgaactc 41827287  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 25623425 - 25623467
Alignment:
Q  202 aaaaaataaaatctagctccaccactcttggcggcccacccta 244  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  25623425 aaaaaaaaaaatctagctccaccactcttgacggcccacccta 25623467  T

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Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 28007990 - 28007822
Alignment:
Q  16 acacagcggcgatagaatgtaacccgtcaaaagttgctgatacgaactgctttggtgttaatgag-aacatgttctctgcacctttgattaattgttttg 114  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28007990 acacagcggcgatagaatgtaacccgtcaaaagttgcttatatgaactgctttggtgttaatgaggaacatgttctctgcacctttgattaattgttttg 28007891  T
Q  115 ccacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaact 183  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28007890 ccacgtgtcgctcatccgtcaaaagaacatgaaaactggagcaagttggaactggagcagatctgaact 28007822  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 28008460 - 28008545
Alignment:
Q  99 ttgattaattgttttgccacgtgtcgctcattcgtcaaaagaacaggaaaactggagcaagttggaactggagcagatctgaactc 184  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28008460 ttgattaattgttttgtcacgtgtcgctcatccgtcaaaagaacaggaaaactggagcaagttagaactggagcagatctgaactc 28008545  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 11441135 - 11441194
Alignment:
Q  184 caaacaaattgccttcgtaaaaaataaaatctagctccaccactcttggcggcccaccct 243  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  11441135 caaacaaattgcattcgtaaaaaataaaatctagctccaccattcttggcggcccaccct 11441194  T

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Target: scaffold0066 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 41876 - 41935
Alignment:
Q  184 caaacaaattgccttcgtaaaaaataaaatctagctccaccactcttggcggcccaccct 243  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41876 caaacaaattgcattcgtaaaaaataaaatctagctccaccactcttggcggcccaccct 41935  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 24551444 - 24551395
Alignment:
Q  187 acaaattgccttcgtaaaaaataaaatctagctccaccactcttggcggc 236  Q
    |||||||||||||  ||||||||||||||||||||| ||||||| |||||    
T  24551444 acaaattgccttcccaaaaaataaaatctagctccatcactcttagcggc 24551395  T

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