View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_high_28 (Length: 380)
Name: NF2717_high_28
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_28 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7285514 - 7285148
Alignment:
| Q |
1 |
acttagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7285514 |
acttagtggaaacgtcaagacaaaagtgtttttatacacgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctca |
7285415 |
T |
|
| Q |
101 |
caaatctaactgcattgcggatgctagatcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatct |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7285414 |
caaacctaactgcattgcggatgctagatcttgatctttcaacccgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatct |
7285315 |
T |
|
| Q |
201 |
ccttcacccaacagcccattcttgatcttaagtcttcttttcaaataagcagttgccacatcattactaagtttcttaaattcctcaccttctaccactc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7285314 |
ccttcacccaacaacccattcttgatcttaagtcttcttttcaaataagcagttgccacatcattactaagtttcttaaattcctcaccttctaccactc |
7285215 |
T |
|
| Q |
301 |
taagggcatgctcataaaggatgaaaaagtttgttacgactttcctactctcttttacatcgtacct |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7285214 |
taagggcatgctcataaaggatgaaaaagtttgttacgactttcctacactcttttacatcgtacct |
7285148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 6838648 - 6838901
Alignment:
| Q |
4 |
tagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctcacaa |
103 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
6838648 |
tagtggaaacatcaagacaaacatgttttt-tacatgttatccttgacatatcaatgcattctttaaatttcaaagctctttgaggtgaagacctcacaa |
6838746 |
T |
|
| Q |
104 |
atctaactgcattgcggatgctaga----------tcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaa |
193 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
6838747 |
acctaaccgcattgcggatgctagaaatagacaaatcttgatctttcaacccgtccatgactactaagttcaatatatgggcaacacacctcatatggaa |
6838846 |
T |
|
| Q |
194 |
atgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaataa |
248 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
6838847 |
gtgatctccttcacccaacaacccattcttgatcttaagtctttgtttcaaataa |
6838901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 6839259 - 6839362
Alignment:
| Q |
264 |
ttactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctactctcttttacatcgt |
363 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| || |||| |||||| |||| |||||||| ||||||||||| ||||||||| |||| || ||| || |
|
|
| T |
6839259 |
ttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaagtttgttaaagctttcctacactctattgcattgt |
6839358 |
T |
|
| Q |
364 |
acct |
367 |
Q |
| |
|
|||| |
|
|
| T |
6839359 |
acct |
6839362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 16000161 - 15999908
Alignment:
| Q |
4 |
tagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctcacaa |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| |||||| | |||| |||||||||||||||||||||||||||| |
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|
| T |
16000161 |
tagtggaaacgtcaagacaaacatgttttt-tacatgttatccttgacatatcaatgtattcttgaaatttcaaagctctttgaggtgaagacctcacaa |
16000063 |
T |
|
| Q |
104 |
atctaactgcattgcggatgctag----------atcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaa |
193 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
16000062 |
acctaaccgcattgcggatgctagcaatagacatatcttgatctttcaacccgtccatgactactaagttcaatatatgggcaacacacctcatatggaa |
15999963 |
T |
|
| Q |
194 |
atgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaataa |
248 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
15999962 |
gtgatccccttcacccaacaacccattcttgatcttaagtctttttttcaaataa |
15999908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 15999542 - 15999439
Alignment:
| Q |
264 |
ttactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctactctcttttacatcgt |
363 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| || |||| |||||| |||| |||||||| ||| ||||||| ||||||||| |||| || ||| || |
|
|
| T |
15999542 |
ttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaactttgttatagctttcctacactctattgcattgt |
15999443 |
T |
|
| Q |
364 |
acct |
367 |
Q |
| |
|
|||| |
|
|
| T |
15999442 |
acct |
15999439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 13307746 - 13307492
Alignment:
| Q |
4 |
tagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctcacaa |
103 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||| | ||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||| || |||| |
|
|
| T |
13307746 |
tagtgggaacatcaagacaaaggtgctttt-tgcatgttatccttgacatttctatgcattctttgaattttgaagctctttgtggtgaagatctaacaa |
13307648 |
T |
|
| Q |
104 |
atctaactgcattgcggatgctag----------atcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaa |
193 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||| || || ||||||| || || ||||||||||| || || | |||| ||||||| || |
|
|
| T |
13307647 |
acctaacagcattgcggatgctagaaatagacaaatcttgatcctttaagccgtccattacaaccaagttcaatatgtgtgctacacacctcatatgcaa |
13307548 |
T |
|
| Q |
194 |
atgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaataag |
249 |
Q |
| |
|
||||| |||||||||| || |||||| || ||||||||||||| || ||||||| |
|
|
| T |
13307547 |
gtgatccccttcacccattaggccattcatgttcttaagtcttctctttaaataag |
13307492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 14596130 - 14596384
Alignment:
| Q |
4 |
tagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaagacctcacaa |
103 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||| | |||| |||||||||||||| ||||||||||| ||||| | |||||||| |||||||| || |||| |
|
|
| T |
14596130 |
tagtgggaacatcaagacaaaggtgctttt-tgcatgctatccttgacatttctatgcattctttgaattttgatgctctttgtggtgaagatctaacaa |
14596228 |
T |
|
| Q |
104 |
atctaactgcattgcggatgct----------agatcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaa |
193 |
Q |
| |
|
| ||||| |||||||||||||| | ||||||||| || || |||||| ||||| ||||||||||| || || | |||| ||||||| || |
|
|
| T |
14596229 |
acctaacagcattgcggatgctaaaaatagacaaatcttgatcctttaagccgtccagtactaccaagttcaatatgtgtgctacacacctcatatgcaa |
14596328 |
T |
|
| Q |
194 |
atgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaataag |
249 |
Q |
| |
|
||| | |||||||||| ||||||||| || ||||||||||||| || ||||||| |
|
|
| T |
14596329 |
gtgacccccttcacccattagcccattcatgttcttaagtcttctctttaaataag |
14596384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 21282664 - 21282752
Alignment:
| Q |
4 |
tagtggaaacgtcaagacaaaagtgtttttatacatgttatccttgacattttgatgcattctttacattttaaagctctttgaggtgaa |
93 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||| | |||||||||||||| |||| ||||||||||| ||||||| |||||| | |||||| |
|
|
| T |
21282664 |
tagtgggaacatcaagacaaatgtgatttt-tgcatgttatccttgagatttctatgcattctttgaattttaatgctcttcgtggtgaa |
21282752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 21282818 - 21282919
Alignment:
| Q |
148 |
ccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaata |
247 |
Q |
| |
|
|||| ||||| ||||||||||| | || | |||| ||||||| || ||||| ||||||||| | || ||||||| |||||||||||||||| ||||| |
|
|
| T |
21282818 |
ccattactaccaagttcaatatgtatgccacacacctcatatgaaagtgatcatcttcacccattaaccaattcttgttcttaagtcttctttttaaata |
21282917 |
T |
|
| Q |
248 |
ag |
249 |
Q |
| |
|
|| |
|
|
| T |
21282918 |
ag |
21282919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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