View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_high_35 (Length: 318)

Name: NF2717_high_35
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_high_35
NF2717_high_35
[»] chr4 (1 HSPs)
chr4 (1-298)||(47817267-47817564)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 47817564 - 47817267
Alignment:
Q  1 tgaacatgtggctttgttgtgatgcagagaagggaagagacaaagttgagttgttgagttcaactcagctgtgttgcgatgaagagaaggaagagatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47817564 tgaacatgtggctttgttgtgatgcagagaagggaagagacaaagttgagttgttgagttcaactcagctgtgttgcgatgaagagaaggaagagatgaa 47817465  T
Q  101 gctgtgttgttgatgtgaatcactcaatcaggaaggagttagggttgaggctgcgttgaatgaatggatgaagagaagggagatgaggctgtgttgttga 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47817464 gctgtgttgttgatgtgaatcgctcaatcaggaaggagttagggttgaggctgcgttgaatgaatggatgaagagaagggagatgaggctgtgttgttga 47817365  T
Q  201 gaaaggtttagggtttcttaatattattacaaaaccaatcaacccttcaacgtggctgggtgtggtggctgcattttttctgcgccacaccactatag 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47817364 gaaaggtttagggtttcttaatattattacaaaatcaatcaacccttcaacgtggctgggtgtggtggctgcattttttctgcgccacaccgctatag 47817267  T

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