View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_high_36 (Length: 316)
Name: NF2717_high_36
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 38278784 - 38279074
Alignment:
| Q |
17 |
acatatatacacggtggatgtatcatatacgtaccttcaaaatgttccatgtgtcacaagcctgtttgatagcttctctcttatgatcggttctgatatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38278784 |
acatatatacacggtggatgtatcatatacgtaccttcaaaatgttccatgtgtcacaagcctgtttgatagcttctctcttatgatcggttctgatatt |
38278883 |
T |
|
| Q |
117 |
ttctcctcataatcctgttagggtgagacttgacaggttggaactgatcaaataacaagccagttatagatatattcgatgcagggaaatgcaaaggcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38278884 |
ttctcctcataatcctgttagggtgagacttgacaggttggaactgatcaaataacaagccagttatagatatattcgatgcagggaaatgcaaaggcta |
38278983 |
T |
|
| Q |
217 |
aagtgtcacattttatctatatatcgagtnnnnnnnnctatatattgttattttatttccctaacttaactcaacaatagagtagtataat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38278984 |
aagtgtcacattttatctatatatcgagtaaaaaaaactatatattgttattttatttccctaacttaactcaacaatagagtagtataat |
38279074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University