View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_38 (Length: 296)
Name: NF2717_high_38
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 47384446 - 47384159
Alignment:
| Q |
1 |
agaagtggtgaatttgccccgacttcaaactcaaacttttgcatatcaacgtctttgtggaagagtcaatttcttgcatacaggctaagttgtagttaat |
100 |
Q |
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| T |
47384446 |
agaagtggtgaatttgccccgacttcaaactcaaacttttgcatatcaacgtctttatggatgagtcaatgtcttgcatacagactaagttgtacttaat |
47384347 |
T |
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| Q |
101 |
ggacacgaaagacatgtaattttatttgggtgtaaaaacgggtagtattgagaaagggagaaattcatcgnnnnnnntgtgggttcaattactgagcaaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |
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| T |
47384346 |
ggacacgagagacatgtaattttatttgggtgtaaaaacgggtagtattgagaaagggagaaattcatcgaaaaaaatgtaggttcaattactaagcaaa |
47384247 |
T |
|
| Q |
201 |
agtaaaccacattattgcattagacaaacattaagtttgtgtatcaatcgttaagtataccnnnnnnnngtgtgttgttgatgatgtc |
288 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47384246 |
agtaaaccacattatcgcattagacaaacattaagtttgtgtatcaatcgttaagtataccttttttttgtgtgttgttgatgatgtc |
47384159 |
T |
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