View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_43 (Length: 267)
Name: NF2717_high_43
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 11068091 - 11067859
Alignment:
| Q |
17 |
aatattaacaataaactgctggtatttctttggaggtggagtgttatcattaagcttctcgtattctattctcaactttaaatttccattctcaacgttt |
116 |
Q |
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| T |
11068091 |
aatattaacaataaactgctggtatttctttggaggtggagtgttatcattaagcttctcgtattctattctcaactttaaatttccattctcaacgttc |
11067992 |
T |
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| Q |
117 |
actatggccttgtagtttttatacaactccaacacattccctcccactgcaacatatgttatagtcttgttcacttcatccacttcaatcctttcgttga |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11067991 |
actattgccttgtagtttttatacaactccaacacattccctcccactgcaacgtatgttatagtcttgttcacttcatccacttcaatcctttcgttga |
11067892 |
T |
|
| Q |
217 |
atgtctcctcctttccttctgcatcaatacatt |
249 |
Q |
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| ||||||||||||||||||||||||||||||| |
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| T |
11067891 |
aggtctcctcctttccttctgcatcaatacatt |
11067859 |
T |
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