View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_44 (Length: 267)
Name: NF2717_high_44
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47339561 - 47339307
Alignment:
| Q |
1 |
cttccaagttcaggaagctcaggtatatctcttttaactctgcattcttggcaagagctttactcagagaaaccccaccctctacacctaacatgttgtc |
100 |
Q |
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| T |
47339561 |
cttccaagttcaggaagctcaggtatatctctcttaactctgcattcttggcaagagctttactcagggaaaccccaccctctacacctaacatgttgtc |
47339462 |
T |
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| Q |
101 |
tcgcaaatcaagcttcctcaaatgggtgcaattccccaaagcatcagataaggcaacgccaccttcatcgcctatccttgtggaggaacaacgaaaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47339461 |
tcgcaaatcaagcttcctcaaatgggtgcaatcccccaaagcatcagataaggcaactccaccttcatcgcctatccttgtggaggaacaacgaaaatcc |
47339362 |
T |
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| Q |
201 |
tccaagcaagaagaacacttcacaacctcagctatagcacgtgctccttcatctc |
255 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47339361 |
tccaagcaagaagaacgcttcacaacctcagctatagcacgtgctccttcatctc |
47339307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 32062017 - 32061944
Alignment:
| Q |
58 |
ctttactcagagaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaa |
131 |
Q |
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||||||| |||| ||| ||| | || ||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
32062017 |
ctttacttagagcaactccagcttccacaccaaacatgttgtcacgcaaatcaagcttcttcaaatgcgtgcaa |
32061944 |
T |
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