View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_46 (Length: 263)
Name: NF2717_high_46
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 37500819 - 37500584
Alignment:
| Q |
26 |
tacacttgagatttatgcaacatgcattgaaaattcgaaataacataaagtaatgaatgttggcaggaattaacacataattatagtaacaacataaaca |
125 |
Q |
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| T |
37500819 |
tacacttgagatttatgcagcatgcattgaaaattcgaaataacataaagtaatgaatgttggcaggaattaacacataattatagtaacaacataaaca |
37500720 |
T |
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| Q |
126 |
atttgggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaattgtgnnnnnnngtctgctaggtaaagct |
225 |
Q |
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| T |
37500719 |
atttaggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaattgtgtttttttgtctgctaggtaaagct |
37500620 |
T |
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| Q |
226 |
aattgatctgttaattgtgtttgtctctgtgatcct |
261 |
Q |
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| T |
37500619 |
agttgatctgttaattgtgtttgtctctgagatcct |
37500584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 37504734 - 37504568
Alignment:
| Q |
29 |
acttgagatttatgcaacatgcattgaaaattcgaaataacataaagtaatgaatgttggcaggaattaacacataattatagtaacaacataaacaatt |
128 |
Q |
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| T |
37504734 |
acttgagattaatgcaatatgcattagaaatttgaaatgacataaagtaacaaatgttaactgaaattaacacataattatattaaaaatatcaacaatt |
37504635 |
T |
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| Q |
129 |
tgggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaa |
196 |
Q |
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| T |
37504634 |
tatgttt-gtcttcattcattgattgagtttgatctttcttttaactaaagttagttgcatattctaa |
37504568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 37498106 - 37498000
Alignment:
| Q |
93 |
aattaacacataattatagtaacaacataaacaatttgggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatctt |
192 |
Q |
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| T |
37498106 |
aattaacacataattatagtaacaatatcaa-tatttgtg-ttcatcttcatccattgactgcgtttcatctttcttttaactaaagccagctgcatttt |
37498009 |
T |
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| Q |
193 |
ctaattgtg |
201 |
Q |
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| T |
37498008 |
ctgattgtg |
37498000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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