View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_48 (Length: 255)
Name: NF2717_high_48
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 2507883 - 2507648
Alignment:
| Q |
8 |
acatcatcatttaaaagaaaagtaaaataactatattaggaagatgacaaattctcccacctttgattgataatttaagaattggtaaaacattaacgat |
107 |
Q |
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| T |
2507883 |
acatcatcatttaaaagaaaagtaaaataactatattaggaagatgacaaattctcccacctttgattgataattcaagaattggtaaaacattaacgat |
2507784 |
T |
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| Q |
108 |
gcctaactttgactcaataaag----nnnnnnnnnctttgagaggactcgatcaacattcatttggcaaaataaagggtgtctaaaatatattttccaac |
203 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2507783 |
gcctaactttgactcaatcaaggtttttttcttttctttgagaggactcgatcaacgttcatttggcaaaataaagggtgtctaaaatttattttccaac |
2507684 |
T |
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| Q |
204 |
atatattattactgcgtcgttataagaggaccagtt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2507683 |
atatattattactgcgtcgttataagaggaccagtt |
2507648 |
T |
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