View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_52 (Length: 243)
Name: NF2717_high_52
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 26504034 - 26504234
Alignment:
| Q |
23 |
ataagttcaattttcaaaacaaaatgaagttgaatcatcccattatttatatcttttttgcgataacaannnnnnnatgtaatgctgctgaggatgcttc |
122 |
Q |
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| T |
26504034 |
ataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctataacaatttttttatgtaatgctgctgaggatgcttc |
26504133 |
T |
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| Q |
123 |
aattgcaaagccttttcta---------------------ccatcagccttggaggaacctgatgtgagaaaaggtaggaaaaagcctccaccacctcct |
201 |
Q |
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| T |
26504134 |
aattgcaaagccttttctaccatctccaacacaattcctcccatcagccttggaggaacctgatgtgagaaaaggtaggaaaaagcctccaccacctcct |
26504233 |
T |
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| Q |
202 |
c |
202 |
Q |
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| |
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| T |
26504234 |
c |
26504234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 26453789 - 26453850
Alignment:
| Q |
22 |
gataagttcaattttcaaaacaaaatgaagttgaatcatcccattatttatatcttttttgc |
83 |
Q |
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| T |
26453789 |
gataagttcaattttcaaaataaaatgaagatgaatcatctcattatttgtatcttttttgc |
26453850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 26521733 - 26521666
Alignment:
| Q |
16 |
gccatcgataagttcaattttcaaaacaaaatgaagttgaatcatcccattatttatatcttttttgc |
83 |
Q |
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| T |
26521733 |
gccattgataagttcaatttttaaaacaaaatgaagatgaatcatctcattatatgtatcttttttgc |
26521666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 26453949 - 26454005
Alignment:
| Q |
149 |
ccttggaggaacctgatgtgagaaaaggtaggaaaaagcctccaccacctcctcaat |
205 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||| || |||||||| |
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| T |
26453949 |
ccttagaggaacctgatgtaagaaaaggtaggaaaaagcctccacgacatcctcaat |
26454005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 26521595 - 26521647
Alignment:
| Q |
16 |
gccatcgataagttcaattttcaaaacaaaatgaagttgaatcatcccattat |
68 |
Q |
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| T |
26521595 |
gccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat |
26521647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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