View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_53 (Length: 238)
Name: NF2717_high_53
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 14733064 - 14732852
Alignment:
| Q |
17 |
agatttgatgcaaaagacaaatgatgatacacgtgagtgggtctataatgtgcaagggcactgattataacagctcttaatgatcacatgcaaacttcac |
116 |
Q |
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| T |
14733064 |
agatttgatgcaaaagacaaatgatgatacacgtgagtgggtctataatgtgcaagggcactgattataacagctcttaatgatcacatgcaaacttcac |
14732965 |
T |
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| Q |
117 |
gggccaaaactttttgtgtactttgtcttcttaagccatgactctttcttatatcatcaaaacaaaaactattccttaggctatttcctccaattctggt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14732964 |
gggccaaaactttttgtgtactttgtcttcttaagccatgactctttcttatatcatcaaaacaaaaaccattccttaggctatttcctccaattctggt |
14732865 |
T |
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| Q |
217 |
ctctctgctcctc |
229 |
Q |
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| T |
14732864 |
ctttctgttcctc |
14732852 |
T |
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