View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_60 (Length: 209)
Name: NF2717_high_60
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_60 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 42569371 - 42569569
Alignment:
| Q |
11 |
cagagaggtacttacaaattgttgaccaacaagatttttacgccagcaatatgcgttgaactcgtgttcttacgacatatgagtcaaacccttaacaatc |
110 |
Q |
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| T |
42569371 |
cagagaggtacttacaaattgttgaccaacaagatttttacgccagcaacttgcgttgaactcgtgttcttacgacggatgagtcaaattcttaacaatc |
42569470 |
T |
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| Q |
111 |
gaacctatgtatattggtagggtcaaagtacttatttacggtggtctcatgaaagaacatatgataaatttatccatttgggtgacctaatttaacttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
42569471 |
gaacctatgtatattggtagggtcaaagtacttatttacggtggtctcatgaaagaacatatgataaatttatcaatttgggtggcctaatttaacttc |
42569569 |
T |
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