View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_high_8 (Length: 623)
Name: NF2717_high_8
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 199 - 611
Target Start/End: Original strand, 27716962 - 27717373
Alignment:
| Q |
199 |
aaggaactcgtaggaagctgagataaccaggaacaacaccattcttagaagtcgtggccaacctcttcacactgagaaagttacgatgataggtaacagt |
298 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27716962 |
aaggaactcgtaggaagctgag-taactaggaacaacaccattcttagaagtcgtggccaacctcttcaaactgagaaagttacgatgataggtaacagt |
27717060 |
T |
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| Q |
299 |
gtcaagagaaaaagtaattaacgtgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggagga |
398 |
Q |
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| T |
27717061 |
gtcaagagaaaaagtaattaacgcgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggagga |
27717160 |
T |
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| Q |
399 |
tgacgtaattttctccatagtttatggttttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacatattttacaaatga |
498 |
Q |
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| T |
27717161 |
tgacgtaattttcgccatagtttatggttttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacatattttacaaatga |
27717260 |
T |
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| Q |
499 |
tttgaagtatgaaaaacaatatcacgaattggaacaaaattcatttacagcgcattatctatatgttctctctaatgaaatacttcgctcaagggtaatc |
598 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
27717261 |
tttgaagtatgaaaaacaatttcacgaattggaacaaaattcatttacagcgcattatctatctgttatctctaatgaaatacttcgctcaagggtaatc |
27717360 |
T |
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| Q |
599 |
ttgtttcatctca |
611 |
Q |
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| T |
27717361 |
ttgtttcatctca |
27717373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 27711088 - 27711273
Alignment:
| Q |
19 |
aagggatatccaaataacccttgtttgaactatgtagacattttgcatgataaaacctaagatcaaatcattgttaagaaaattaacaacacatcaaatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27711088 |
aagggatatccaaataacccttgtttgaactatgtagacattttgcatgataaaacctaagatcaaaacattgttaagaaaattaacaacacatcaaatg |
27711187 |
T |
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| Q |
119 |
aaagaatatgacaaagatattgtttgaattaatcgagttagtagacggttcaatttttccttagttattgaattgatcttaaggaa |
204 |
Q |
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| T |
27711188 |
aaagaatatgacaatggtattgtttgaattaatcgagttagtagacggttcaatttttccttagttattgaattgatcttaaggaa |
27711273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 28065393 - 28065337
Alignment:
| Q |
321 |
gtgttagcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgc |
377 |
Q |
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||||||| |||||||| ||||| |||| ||||| || ||||||||||||||||||| |
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| T |
28065393 |
gtgttaggcaaaggggtctcacacgtgatttatcaaataaataagggaggtttgtgc |
28065337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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