View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_10 (Length: 618)
Name: NF2717_low_10
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 343 - 607
Target Start/End: Complemental strand, 34605914 - 34605651
Alignment:
| Q |
343 |
gaaagtgagatcttgttatcattcaccgtatcagaattggttttcagttatatcatatatagcgtataacaacttgcatgtctttttttccttaaaaaaa |
442 |
Q |
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| T |
34605914 |
gaaagtgagaccttgttatgattcaccgtaacagaattggttttcagttatattatatatagcgcataacaacttgcatgtctagttttccttaaaaaga |
34605815 |
T |
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| Q |
443 |
cgtgcataatctaatttgtnnnnnnnnnnnntctaattaaataataatctaagaaaagagacataacataattcaggataggaaataaattaaaccataa |
542 |
Q |
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| T |
34605814 |
cgtgcataatctaatttgtaaaaaaaaaaaaga-aattaaataataatctaagaaaagagaaataacttaattcaggataggaaataaattaaaccataa |
34605716 |
T |
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| Q |
543 |
aattcgaaaagagtaataattaattgtaatcaagtgcaactctacttactcatagaattcttcat |
607 |
Q |
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| T |
34605715 |
aattcgaaaagagtaataattaattgtaatcaagtgcaactctacttactcatagaattcttcat |
34605651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 34606202 - 34606027
Alignment:
| Q |
17 |
aattttaccatttgaattaaattaagatacttatagatttgacacctaaaaatcttgactactttaaaacgaacaagtgtttataattttcttcaaagga |
116 |
Q |
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| T |
34606202 |
aattttagcatttgaattaaattaagatacttatacatttgacacctaaaaatcttgactactttaaaacgaacaagtgtttattattttcttcaaagga |
34606103 |
T |
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| Q |
117 |
ccacggattaaaattagaatttctttatgaatgagaaccaaactactcttgagtttttggtttgagttcaaccaaac |
193 |
Q |
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| T |
34606102 |
ccacggattaaaattagaatttctttataaatgagaaccaaactactc-tgagtttttggtttgagttcaaccaaac |
34606027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 589
Target Start/End: Original strand, 27758358 - 27758425
Alignment:
| Q |
522 |
aggaaataaattaaaccataaaattcgaaaagagtaataattaattgtaatcaagtgcaactctactt |
589 |
Q |
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| T |
27758358 |
aggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaactctactt |
27758425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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