View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_11 (Length: 573)
Name: NF2717_low_11
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 48 - 565
Target Start/End: Complemental strand, 26321826 - 26321309
Alignment:
| Q |
48 |
tttgttgagggtggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaattt |
147 |
Q |
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| T |
26321826 |
tttgttaatggtggtggaattgaatctaatatggactgagctgaatgtgatggattttgtgaatttgttgcattttatacatgttattttcggtgaattt |
26321727 |
T |
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| Q |
148 |
gtggaaattttggatgtagaatgatttggggaagtctaatagagaatcaatcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaaga |
247 |
Q |
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| T |
26321726 |
gtggatattttggatgtagaatgatttggggaagtctaatagagaatcaagcaaacagatggaaagaaataaaaaatagtcattttagttgttagaaaga |
26321627 |
T |
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| Q |
248 |
atgcaaatggactaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaattt |
347 |
Q |
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| T |
26321626 |
atgcaaatggactaatgttgttgagcatttggggttgccatctttctggaagttatcttttgttcttctttcatgattgtgtaattttactgttaaattt |
26321527 |
T |
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| Q |
348 |
ctgtttctctgaatgaatgtaatatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagatttt |
447 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26321526 |
gtgtttctctgaatgaatgtactatgttctcatttgggttagtttttaggaggaaaaacactgatgatggaaaaatataatgtttaaaaaatgagatttt |
26321427 |
T |
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| Q |
448 |
gaaattgggtttgtgagatcattgtaagtaatatagaccatagtaaggtaccacttggtggaattaatgctagggattgattatagttaggataaaagca |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26321426 |
gaaattgggtttgtgagatcattgtaagtaatatagaccatagtgaggtaccacttggtggaattaatgttagggattgattatagttaggataaaagca |
26321327 |
T |
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| Q |
548 |
catagatacacctatgct |
565 |
Q |
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||||||||||||| |||| |
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| T |
26321326 |
catagatacacctctgct |
26321309 |
T |
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