View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_low_16 (Length: 484)

Name: NF2717_low_16
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_low_16
NF2717_low_16
[»] chr3 (3 HSPs)
chr3 (3-95)||(42569802-42569894)
chr3 (392-472)||(42569525-42569605)
chr3 (3-95)||(42576847-42576936)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 42569894 - 42569802
Alignment:
Q  3 atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgccattttcgtattgatttggcattctgagaccttctctacagcggaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||    
T  42569894 atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgtcattttcgtagtgatttggtattctgagaccttctctacaacggaa 42569802  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 42569605 - 42569525
Alignment:
Q  392 ccaatcttactctctacatttatcatgnnnnnnnaagaagttaaattaggtcacccaaattgataaatttatcatatgttc 472  Q
    |||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||    
T  42569605 ccaatcttactctctacatttatcatgtttttttaagaagttaaattaggccacccaaattgataaatttatcatatgttc 42569525  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 42576936 - 42576847
Alignment:
Q  3 atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgccattttcgtattgatttggcattctgagaccttctctacagcggaa 95  Q
    |||||| |||||||   ||||||||||||| ||||||||||| | ||||||||||   |||||||||||||||||||||||||| || |||||    
T  42576936 atagaacgaagtgcaactctcgctgaattagatttccaaatgcttgccattttcg---tgatttggcattctgagaccttctctgcaacggaa 42576847  T

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