View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_2 (Length: 845)
Name: NF2717_low_2
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 767
Target Start/End: Original strand, 18168812 - 18169579
Alignment:
| Q |
1 |
attggacacgacaatgatttctctttagagtgcatggccattagtggcaattcaagtgaaatagcactagaatttttgatgtctcttatatcttctaatg |
100 |
Q |
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| T |
18168812 |
attggacacgacaatgatttctcttctgagtgcatggccattagtggcaattcaagtgaaatagcactagaatttttgaagtctcttatatcttctaatg |
18168911 |
T |
|
| Q |
101 |
aatgtttctcttcctttctctctgagctctcagaagatgtcaatgaactttccaatgaacacaaagaagttccattgtcatgtttcctctcctcgtagtt |
200 |
Q |
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| T |
18168912 |
aatgtttctcttcctttctctctgagctctcagaagatgtcaaagaactttccaatgaacacaaagaagttccattttcatgtttcctctcctcgtagtt |
18169011 |
T |
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| Q |
201 |
taaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgatcatagtaaccaactgagagagttcatcttctgtgagt |
300 |
Q |
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| T |
18169012 |
taaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgatcatagtaaccaattgagagagttcatcttttgtgagt |
18169111 |
T |
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| Q |
301 |
tttatcccaattggtgaagaattgtatccagagagggcttcctgcgccttcgttagtaccgattgtaaatattttccttgagcttcgattcgaagctgca |
400 |
Q |
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| T |
18169112 |
tttatcccaattggtgaagaattgtatccagagagggcttcctgcgccttcattagtaccgattgtaaatattttccttgagcgtcaattcgaagctgca |
18169211 |
T |
|
| Q |
401 |
aatgtttctgcacctgaaatcaacatcctaatcgattaacacgtacttatgcaacatttagtgcatatttggatacacaatgtatttgacgaaatcacgg |
500 |
Q |
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| T |
18169212 |
aatgtttctgcacctgaaatcaacatcctaatcgattaacacgtacttatgcaacatttagtgcatatttggatacacaatgtatttgacgaaatcacgg |
18169311 |
T |
|
| Q |
501 |
tggtacactgtgattctaccaaactcactgtcaatccaaaaatgtacttagaattatgattgaagcaaattttaatcatgatatcacattatatatgtta |
600 |
Q |
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| T |
18169312 |
tggtacactgtcattctaccaaacacactgtcaatccaaaaatgtacttagaattatgattgaatcaagttttattcatgatatcacattatatatgtta |
18169411 |
T |
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| Q |
601 |
cctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatctccatgtttctggcaaaaatagaatttgaaaataaaat |
700 |
Q |
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| T |
18169412 |
cctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatctccatgtttctggcaaaaatagaatttgaaaataaaat |
18169511 |
T |
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| Q |
701 |
-tttagctaataccatttcaatctaaaattattctgtcgaaaaaatcataataaaatatttgataaaa |
767 |
Q |
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| T |
18169512 |
ctctagctaataccatttcaatctaaaattattttgtcgaaaaaaccttaataaaatatttgataaaa |
18169579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 747 - 829
Target Start/End: Original strand, 18169583 - 18169666
Alignment:
| Q |
747 |
ataataaaatatttgataaaa-gctctaattattactcagtgatttgattatggtccccttgaatgatttctctgctgcattgt |
829 |
Q |
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| T |
18169583 |
ataataaaatatttgataaaaagctctaattattactcagtgatttgattatggtccccttgaccgatttctctgctgcattgt |
18169666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 31748532 - 31748617
Alignment:
| Q |
337 |
gcttcctgcgccttcgttagtaccgattgtaaatattttccttgagcttcgattcgaagctgcaaatgtttctgcacctgaaatca |
422 |
Q |
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| T |
31748532 |
gcttcctgtgccttcattagtactgattgtaagtactttccttgagcttcaattctaaactgtaaatgtttctgcacctgaaatca |
31748617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 589 - 640
Target Start/End: Original strand, 31748688 - 31748739
Alignment:
| Q |
589 |
ttatatatgttacctcaatttgttcattaagtttcctttctacttccatttg |
640 |
Q |
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| T |
31748688 |
ttataaatgttacctcaatttgttcataaagtttcttttgtacttccatttg |
31748739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 31748370 - 31748452
Alignment:
| Q |
181 |
tgtttcctctcctcgtagtttaaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgat |
263 |
Q |
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| T |
31748370 |
tgtttcctctcaccgaagtttaaactaaaacctcttgtttctgtcagttctgaaagtggagaactaggacatgcattgttgat |
31748452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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