View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_20 (Length: 461)
Name: NF2717_low_20
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 30239055 - 30238621
Alignment:
| Q |
17 |
attagttccaagtttcaaccaaactcttcactaagcaaaacttgttggataacaaagatctgaaatcaatttacaattatgcaacttagtgtagtattta |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30239055 |
attagttctaagtttcaaccaaactcttcactaagcaaaacttgttggataacaaagatctgaaatcaatttacaattatgcaactttgtgtagtatttt |
30238956 |
T |
|
| Q |
117 |
atcatatgattacagaacaacaacaaacactagatcaacttaatcacaattcagaaaaatagcgaatagattaaacgaaaagatcatcaacaaacacgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238955 |
atcatatgattacagaacaacaacaaacactagatcaacttaatcacaattcagaaaaatagcgaatagattaaacgaaaagatcatcaacaaacacgag |
30238856 |
T |
|
| Q |
217 |
acggaatcatacaatcatttgaagtgccatcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238855 |
acggaatcatacaatcatttgaagtgccatcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagaga |
30238756 |
T |
|
| Q |
317 |
ttgtttccaacaattcttcaacttacaaaatagnnnnnnnacaatacatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattacca |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238755 |
ttgtttccaacaattcttcaacttacaaaatagtttttttacaataaatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattacca |
30238656 |
T |
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| Q |
417 |
agtgtcactgaagaggtaactcttgttttcctttg |
451 |
Q |
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| T |
30238655 |
agtgtcactgaagaggtaactcttgttttcctttg |
30238621 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 39325312 - 39325356
Alignment:
| Q |
252 |
aagttgagacaatagctttgaagatcatagctatactgtggactg |
296 |
Q |
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||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
39325312 |
aagttcagacaataactgcgaagatcatagctatactgtggactg |
39325356 |
T |
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