View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_22 (Length: 424)
Name: NF2717_low_22
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 66 - 405
Target Start/End: Complemental strand, 1037269 - 1036930
Alignment:
| Q |
66 |
gtaaaggattgttcaaaggtcatgcaagagtataaatgggaaaataactttgaaactataacaatatacccaaactagacaacttcgtgattgtactatg |
165 |
Q |
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| T |
1037269 |
gtaaaggatcgatcaaaagtcatgcaagagtataaatgggaaaataactttgaaactataaaaatatacccaaactagacaactttgtgactgtactatg |
1037170 |
T |
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| Q |
166 |
cttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatgagacaatgaataaagaaaagcataaggatta |
265 |
Q |
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| T |
1037169 |
cttattacaagttttgacatgttaaattttggggcatagttattatagacgtttcagtgaggataaatgagacaatgaataaagaaaagcataaggatta |
1037070 |
T |
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| Q |
266 |
gcctcgtcctgactcgtgtcccttgcaacgagccacgcaccgtgatactgatggaaagttagaagtgtttcgccattgcctcacccgcttcgcgagatat |
365 |
Q |
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| T |
1037069 |
gcctcgtcccgactcgtgtcccttccaatgagccacacaccgtgataccgatggaaagttagaagtgtttcgccattgcctcacccgcttcgcgagatat |
1036970 |
T |
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| Q |
366 |
aggaaagttcagaagtgtttcatcactatttaaatcgcat |
405 |
Q |
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| T |
1036969 |
acgaaagttcagaagtgtttcatcactatttaaatcgcat |
1036930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 24763546 - 24763426
Alignment:
| Q |
99 |
aaatgggaaaataactttgaaactataacaatatacccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggg |
198 |
Q |
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| T |
24763546 |
aaatgggaaaatgactttgaaaccatggaaattcacccaaactagtcaacttcgtgaccaagatatgcttattacaagttttatcatgttaaattttggg |
24763447 |
T |
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| Q |
199 |
gcatagttattacagacgttt |
219 |
Q |
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| T |
24763446 |
gtataatcattacggacgttt |
24763426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 4962829 - 4962783
Alignment:
| Q |
134 |
cccaaactagacaacttcgtgattgtactatgcttattacaagtttt |
180 |
Q |
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| T |
4962829 |
cccaaactagacaactttgtaactgtactatgcttattacaggtttt |
4962783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 9025937 - 9025848
Alignment:
| Q |
132 |
tacccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttca |
221 |
Q |
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| T |
9025937 |
tacccaaactagacaactctgtgattgtactatgtttatcacaatttttatcatgttaatacttggggtataatcattacagacatttca |
9025848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 34119896 - 34119849
Alignment:
| Q |
133 |
acccaaactagacaacttcgtgattgtactatgcttattacaagtttt |
180 |
Q |
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| T |
34119896 |
acccaaactagacaactttgtgaccgtactatacttattacaagtttt |
34119849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 16649442 - 16649305
Alignment:
| Q |
136 |
caaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatga |
235 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| |||| |||||||| | || ||| ||||| ||||| || ||| |||| | ||||| |
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| T |
16649442 |
caaactagacaacctcgtgatcatactatatttattacaatttttatcatgttaattattagggtatagtcgttacatacattttggtgataagaaatgt |
16649343 |
T |
|
| Q |
236 |
gacaatgaataaagaaaagcataaggattagcctcgtc |
273 |
Q |
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| T |
16649342 |
gataaggaataaagaaaagcaaaaggatcaacctcgtc |
16649305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 16380421 - 16380300
Alignment:
| Q |
135 |
ccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatg |
234 |
Q |
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| T |
16380421 |
ccaaaccagacaactttataactgtactatgcttactataagttttagcatgttaattcttggggtatagtcattaccgacatttcggtgatgagaaata |
16380322 |
T |
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| Q |
235 |
agacaatgaataaagaaaagca |
256 |
Q |
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| T |
16380321 |
agacagagaatgaagaaaagca |
16380300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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