View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_low_24 (Length: 413)
Name: NF2717_low_24
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 52590752 - 52590353
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatcataacaaat----attcagtaaaaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52590752 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatcataacaaattaatattcagtaaaaa |
52590653 |
T |
|
| Q |
97 |
tatatttcatcaatttaattcatcttaaacatttcgattgaagattaaataataaaaacacatatttaatgaaagacacttacataatatgttgtgactg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590652 |
tatatttcatcaatttaattcatcttaaacatttcgattgaagattaaataataaaaacacatatttaatgaaagacacttacataatatgttgtgactg |
52590553 |
T |
|
| Q |
197 |
tgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatccagagccagatgctttgtccaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590552 |
tgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatccagagccagatgctttgtccaa |
52590453 |
T |
|
| Q |
297 |
agacaaagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagtattgattaaaattactagcagcagaggcttct |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52590452 |
agacaaagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagtattgattaaaattactagcagcagaggcttct |
52590353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 377
Target Start/End: Complemental strand, 53492513 - 53492310
Alignment:
| Q |
174 |
acttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaat |
273 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| || || ||||| || |||||||| |||||||| ||||| | ||| ||||||||||| |||| |
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| T |
53492513 |
acttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaag |
53492414 |
T |
|
| Q |
274 |
ccagagccagatgctttgtccaaagacaaagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagtattgattaa |
373 |
Q |
| |
|
|| || ||||| | || || | ||| | |||||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||||| ||||| || |
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|
| T |
53492413 |
cctgaaccagaggacttatcaagagatagagtaagaagttggccactgttgagtattttagcacgaccatccccccatgttatatcaaagtcttgataaa |
53492314 |
T |
|
| Q |
374 |
aatt |
377 |
Q |
| |
|
|||| |
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|
| T |
53492313 |
aatt |
53492310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 353
Target Start/End: Complemental strand, 53498827 - 53498648
Alignment:
| Q |
174 |
acttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaat |
273 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| || || |||||||| | ||||| |||||||| ||||| ||||| ||||||||||| |||| |
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|
| T |
53498827 |
acttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaag |
53498728 |
T |
|
| Q |
274 |
ccagagccagatgctttgtccaaagacaaagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgt |
353 |
Q |
| |
|
|| || ||||| |||||||| | ||| | ||||||||| | |||||||||| |||||| |||||||||| |||||||| |
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|
| T |
53498727 |
cctgaaccagaggctttgtcaagagatagagtaagaagattggcgttgttgagtattttggcacgaccatctccccatgt |
53498648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 364
Target Start/End: Complemental strand, 53494813 - 53494651
Alignment:
| Q |
202 |
gcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatccagagccagatgctttgtccaaagaca |
301 |
Q |
| |
|
|||||||| || || |||||||| || ||||| ||||| || ||||| | || ||||| ||||| |||||||||| ||||| |||||||| | || | |
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|
| T |
53494813 |
gcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaatccagaaccagaggctttgtcaagggata |
53494714 |
T |
|
| Q |
302 |
aagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagt |
364 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||| |||||||||| ||||||||||||||||||| |
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|
| T |
53494713 |
aagtgagaagttgtccgttgtcgagtatcttggcacgaccatctccccatgttatatcaaagt |
53494651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 53501950 - 53501830
Alignment:
| Q |
174 |
acttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaag-tactcatttttggaacgaaa |
272 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||| || || ||||| || |||||||| ||||| || ||||| || |||||||| || || | || |
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|
| T |
53501950 |
acttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaatcttcccaaaagagatactcattctttgattggaa |
53501851 |
T |
|
| Q |
273 |
tccagagccagatgctttgtc |
293 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
53501850 |
tcctgaaccagatgctttgtc |
53501830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 377
Target Start/End: Complemental strand, 37188474 - 37188272
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
274 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| || || ||||| || || ||||| |||||||| ||||| | ||| ||||||||||| |||| | |
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|
| T |
37188474 |
cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaac |
37188375 |
T |
|
| Q |
275 |
cagagccagatgctttgtccaaagacaaagtaagaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagtattgattaaa |
374 |
Q |
| |
|
|||||||||| | |||||| | |||||||||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||||| ||||| ||| |
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|
| T |
37188374 |
cagagccagaggatttgtcaagagacaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttgataaaa |
37188275 |
T |
|
| Q |
375 |
att |
377 |
Q |
| |
|
||| |
|
|
| T |
37188274 |
att |
37188272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 32708724 - 32708692
Alignment:
| Q |
12 |
ttacccaaaaattcaaaatctatttcatcatga |
44 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
32708724 |
ttacccaaaaactcaaaatctatttcatcatga |
32708692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 16941576 - 16941467
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
274 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| | |
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|
| T |
16941576 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
16941477 |
T |
|
| Q |
275 |
cagagccaga |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
16941476 |
cagagccaga |
16941467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 17012241 - 17012132
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
274 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
17012241 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
17012142 |
T |
|
| Q |
275 |
cagagccaga |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
17012141 |
cagagccaga |
17012132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16942169 - 16942094
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatca |
76 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||||||||||| | || |||||||||||||||| |||||| |
|
|
| T |
16942169 |
caccactcaagttaccaagaaattcaaagtctatttcatcatgagtagaccctagagaagatagctgcatcaatca |
16942094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17012834 - 17012759
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatca |
76 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||||||||||| | || |||||||||||||||| |||||| |
|
|
| T |
17012834 |
caccactcaagttaccaagaaattcaaagtctatttcatcatgagtagaccctagagaagatagctgcatcaatca |
17012759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 40031102 - 40031203
Alignment:
| Q |
177 |
tacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatcca |
276 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| || |||||||| || | ||||||||||| | | |||||||| ||| |||| ||||| | ||||||| |
|
|
| T |
40031102 |
tacataatatgcagtgacaatgcctgcagagttccctggcacaagtttgatttgcatgtcaaatctaccaaacaaatacgcattcttggatccaaatcca |
40031201 |
T |
|
| Q |
277 |
ga |
278 |
Q |
| |
|
|| |
|
|
| T |
40031202 |
ga |
40031203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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