View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_28 (Length: 394)
Name: NF2717_low_28
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 22641462 - 22641269
Alignment:
| Q |
23 |
accatcaacattctttacaacaagaaaaatggaaagaaagaaaatcatataattaacaaacttgagtgtttttaccatattttgttctctttgtatgtaa |
122 |
Q |
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| T |
22641462 |
accatcaacattctttacaacaagaaaaatagaaagaaagaaaatcatataattaactaacttgagtgtttttaccatattttgttctctttgtatgtaa |
22641363 |
T |
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| Q |
123 |
gaaatataacatagaagatgatttgatcatcttatagtgtatatagcacatatattggtgtgctaataatagttaaatacattcggctcttaag |
216 |
Q |
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| T |
22641362 |
gaaatataacatagaagatgatttgatcatcttatagtgtataaagcatatatattgttgtgctaataatagttaaatacattcagctcttaag |
22641269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 285 - 387
Target Start/End: Complemental strand, 22641200 - 22641098
Alignment:
| Q |
285 |
gtattatgtttgcacctttagcattcttactaaaggggtaacgtaaataccttcataaattttagaattcataattttttaactgactattccacctttg |
384 |
Q |
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| T |
22641200 |
gtattatgtttgcacctttagcattcttactaaaggggtaacgtaaataccttcataaattttaaaattcataattttttaactgactattccacctttg |
22641101 |
T |
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| Q |
385 |
cta |
387 |
Q |
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||| |
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| T |
22641100 |
cta |
22641098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 22640189 - 22640109
Alignment:
| Q |
120 |
taagaaatataacatagaagatgatttgatcatcttatagtgtatatagcacatatattggtgtgctaataatagttaaatacat |
204 |
Q |
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| T |
22640189 |
taagaaatataacataaaacatgatttgat----ttatagtgtataagacacatatgttgttgtgctaataatagttaaatacat |
22640109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 22639997 - 22639955
Alignment:
| Q |
345 |
tttagaattcataattttttaactgactattccacctttgcta |
387 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22639997 |
tttaaaattcataattttttaactgactattccacctttgcta |
22639955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 18592919 - 18593000
Alignment:
| Q |
24 |
ccatcaacattctttacaacaagaaaaatggaaagaaagaaaatcatataattaacaaacttgagtgtttttaccatatttt |
105 |
Q |
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| T |
18592919 |
ccatcaacattctttataaaaagaaaaagggatagaaataaaatcatataatacacaaacttgagagttttaaccatatttt |
18593000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 4734899 - 4734964
Alignment:
| Q |
40 |
caacaagaaaaatggaaagaaagaaaatcatataattaacaaacttgagtgtttttaccatatttt |
105 |
Q |
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| T |
4734899 |
caacaagaaacagggaaagaaataaaatcatagaataaacaaacttgagagttctagccatatttt |
4734964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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