View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_low_34 (Length: 348)
Name: NF2717_low_34
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 43462644 - 43462976
Alignment:
| Q |
1 |
agtatagtcagtaatgagactgctttctgttccttccattgcagtagcctaaaaatcatcccatgaacattagtaacataatttgatatagtagtaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
43462644 |
agtatagtcagtaatgagactgctttctgttccttccattgcagtagcctaaaaatcatcccatgtacattagtaacataatttgatatagt---aatta |
43462740 |
T |
|
| Q |
101 |
ttgattaatgtttaatctttgaataccttcatgaaaaggtctagttctgcctctggaaatatccctgcatccttttcccttctagcaagctccgacaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43462741 |
ttgattaatgtttaatctttgaataccttcatgaaaaggtctagttctgcctctggaaatatccctgcatccttttcccttctagcaagttccgacaata |
43462840 |
T |
|
| Q |
201 |
ggtctgcagtaacattttaatttattgatcacaaattcatatttaaaatttacttgatttgatattcccttgacaatataaaattgaaaggaaatttatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43462841 |
ggtctgcagtaacattttaatttattgatcacaaattcatatttaaaatttacttgatttgatattcccttgacaatataaaattgaaaggaaatttatt |
43462940 |
T |
|
| Q |
301 |
gatgaaatttaataccatatcgtgttccaactcctt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43462941 |
gatgaaatttaataccatatcgtgttccaactcctt |
43462976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 4496431 - 4496361
Alignment:
| Q |
122 |
aataccttcatgaaaaggtctagttctgcctctggaaatatccctgcatccttttcccttctagcaagctc |
192 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
4496431 |
aataccttcatgaacaggtcaagttctgcttctggaaatataccagcttccttttcccttctagcaagctc |
4496361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4496551 - 4496501
Alignment:
| Q |
1 |
agtatagtcagtaatgagactgctttctgttccttccattgcagtagccta |
51 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4496551 |
agtatagtctgtaatgagactgctttctgttcctttcactgcagtagccta |
4496501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University