View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_35 (Length: 346)
Name: NF2717_low_35
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 6284966 - 6285273
Alignment:
| Q |
24 |
atgacccatagagttaaaggaattactttatgagaaatcaatacaaaatgnnnnnnntgtgacaaaatatactcgtattaattaactagttacaacaaaa |
123 |
Q |
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| T |
6284966 |
atgacccatagagttaaaggaattactttatgagaaa---atgaaaaa-------aatgtgacaaaatatactcgtattaattaactagttacaacaaaa |
6285055 |
T |
|
| Q |
124 |
ataaacgtgtctctacagctata--tatacttaactatagtcaagagtcaagacactctcaaccatagactaaaagcagtatatcattctttttctcctc |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6285056 |
ataaacgtgtctctacagctatatatatacttaactataatcaagagtcaagacactctcaaccataggctaaaagcagtatatcattctttctctcctc |
6285155 |
T |
|
| Q |
222 |
ttcattaattattgtgctattagctacctttagccatggcatctacttgcgataagggttttgctgatagttatatgattttgaatccagaagatgctca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285156 |
ttcattaattattgtgctattagctacctttagccatggcatctacttgcgataagggttttgctgatagttatatgattttgaatccagaagatgctca |
6285255 |
T |
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| Q |
322 |
tttctttgatattcttcg |
339 |
Q |
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||||||||||||| |||| |
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| T |
6285256 |
tttctttgatattattcg |
6285273 |
T |
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