View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_4 (Length: 700)
Name: NF2717_low_4
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 244 - 532
Target Start/End: Complemental strand, 11820607 - 11820318
Alignment:
| Q |
244 |
atgaattagatatatgcaacgatggacatacaatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaacatttttgtgtggagat |
343 |
Q |
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| T |
11820607 |
atgaactagatatattcaaagatggatatacaattttgggttcggatgtgtgccattttgttggcaagctatttttgtgttaatatttttgtgtggaggt |
11820508 |
T |
|
| Q |
344 |
tgaatgagtggta-ctataatttgaaactaagaaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttg |
442 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| | | || |||||||| |||||||||| ||||| | ||||| |||||||||| |
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| T |
11820507 |
tgaatgagtggtaactataatttgaaactaagaaagaatcaataccttttgccatctggtcatatgggatggccatttattggcaatatgttgacctttg |
11820408 |
T |
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| Q |
443 |
ttaaagatttttcatcaggccatcctgattcattcatcaacaaccttgtttccaggtctctttctttatctccccttgaaattctacttc |
532 |
Q |
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| T |
11820407 |
ttaaagatttctcatcaggccatcctgattcattcatcaaaaaccttgtttccaggtctctttatttttctccccttgaaattcttcttc |
11820318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 264 - 509
Target Start/End: Complemental strand, 11805171 - 11804926
Alignment:
| Q |
264 |
gatggacatacaatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaacatttttgtgtggagattgaatgagtggtactataat |
363 |
Q |
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| T |
11805171 |
gatggaaatagaatattgggtttggatgtgtgccattttgttggcaagctatttttgtttgatcaattttatgtggagattgaatgagtggtattataat |
11805072 |
T |
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| Q |
364 |
ttgaaactaagaaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttgttaaagatttttcatcaggcc |
463 |
Q |
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| T |
11805071 |
atgaaactcaaaaaaaaacaataccctctacctcctggtcatttgggatggcctctcattggcaacatgttagcttttgttaaagatttctcatctggtc |
11804972 |
T |
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| Q |
464 |
atcctgattcattcatcaacaaccttgtttccaggtctctttcttt |
509 |
Q |
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| T |
11804971 |
atcctgattcattcatcaccaaccttgtttccaagtctctttcttt |
11804926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 365 - 505
Target Start/End: Complemental strand, 11819061 - 11818921
Alignment:
| Q |
365 |
tgaaactaagaaagaaacaataccctctacctcctggtcatttgggatggcctcttattcgaaatatattgacctttgttaaagatttttcatcaggcca |
464 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
11819061 |
tgaaactaagaaagaaacagtaccctctgcctcctggtcatttgggatggccacttattggaaatatgttgacctttgttaaagatttctcatcaggcca |
11818962 |
T |
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| Q |
465 |
tcctgattcattcatcaacaaccttgtttccaggtctcttt |
505 |
Q |
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| T |
11818961 |
tcctgattcattcatcaacaaccttgtttccaagtctcttt |
11818921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 11819120 - 11819058
Alignment:
| Q |
264 |
gatggacatacaatattgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaa |
326 |
Q |
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| T |
11819120 |
gatggaaatacaatactgggtttggatgtgtgccattttatttgcaagctatttttgtgtgaa |
11819058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 469 - 534
Target Start/End: Complemental strand, 11827839 - 11827774
Alignment:
| Q |
469 |
gattcattcatcaacaaccttgtttccaggtctctttctttatctccccttgaaattctacttctt |
534 |
Q |
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| T |
11827839 |
gattcattcatcaacaaccttatttccaggtctctttctttttctccccttgaaattcttcttctt |
11827774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 591 - 673
Target Start/End: Complemental strand, 11820264 - 11820183
Alignment:
| Q |
591 |
aattttcttaacattgttgtgagcccacaaatcggtacttgtgtactagtttgtggtacttttgcgaattagttcgcataaat |
673 |
Q |
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| T |
11820264 |
aattttcttaacattgttgtgaaccg-caaattggtatttgcgtactggtttgtggtacttttgtgaattagttggcataaat |
11820183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 674
Target Start/End: Complemental strand, 29849104 - 29849054
Alignment:
| Q |
624 |
ggtacttgtgtactagtttgtggtacttttgcgaattagttcgcataaatt |
674 |
Q |
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| T |
29849104 |
ggtacttgcgtaccagttcgtggtacttttgcgaattggttcgcacaaatt |
29849054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 685
Target Start/End: Original strand, 16723843 - 16723904
Alignment:
| Q |
624 |
ggtacttgtgtactagtttgtggtacttttgcgaattagttcgcataaatttccatgtaact |
685 |
Q |
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| T |
16723843 |
ggtacttgtgtaccggttcgtggtacttttgtgaattggttcgcacaaattcccctgtaact |
16723904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 668
Target Start/End: Complemental strand, 41490141 - 41490093
Alignment:
| Q |
620 |
aatcggtacttgtgtactagtttgtggtacttttgcgaattagttcgca |
668 |
Q |
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| T |
41490141 |
aatcggtacttgtgtacttttttgtggtacttctgctaatttgttcgca |
41490093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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