View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_low_50 (Length: 261)
Name: NF2717_low_50
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 6961825 - 6961585
Alignment:
| Q |
5 |
aacttaaccaaagtgcgatcnnnnnnnggaatgatgaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgcaagagcaaatcc |
104 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6961825 |
aacttaatcaaagtgcgatcaaaaaaaggaatgatcaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgcaagagcaaatcc |
6961726 |
T |
|
| Q |
105 |
tgcaattttagcagaatcagcaaacctatgagctatgtcttgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6961725 |
tgcaattttagcagaatcagcaaacctatgagctatgtcctgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggat |
6961626 |
T |
|
| Q |
205 |
tgtgttgacttgagatgtaaagtggtgctacgattattgat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6961625 |
tgtgttgacttgagatgtaaagtggtgctacgattattgat |
6961585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 33607533 - 33607624
Alignment:
| Q |
145 |
tgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggattgtgttgacttgagatgtaaagtggtgctacg |
236 |
Q |
| |
|
||||| |||||||| | ||||||||||| ||||||||| |||||||||||||||| ||||| || ||||| || || ||| || ||||||| |
|
|
| T |
33607533 |
tgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagccttagaaacagattgagtagacttaagctgcaaactgttgctacg |
33607624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 33607438 - 33607491
Alignment:
| Q |
62 |
aacatacagaaacaacaagagcagaggttgcaagagcaaatcctgcaattttag |
115 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
33607438 |
aacatacagagacaacgagagcagaggtagcaagagcaaatccagcaatcttag |
33607491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University